DESCRIPTION

Package: ProjecTILs
Type: Package
Title: Reference-based analysis of scRNA-seq data
Version: 3.5.0
Authors@R: c(
  person(given = 'Massimo', family = 'Andreatta',
    email = 'massimo.andreatta@unil.ch',
    role = c('aut','cre'),
    comment = c(ORCID = '0000-0002-8036-2647')),
  person(given = 'Paul', family = 'Gueguen',
    email = 'paul.gueguen@unil.ch',
    role = c('aut'), 
    comment = c(ORCID = '0000-0003-2930-6073')),
  person('Josep','Garnica',
    email = 'josep.garnicacaparros@unil.ch',
    role = c('aut'),
    comment = c(ORCID = '0000-0001-9493-1321')),   
  person(given = 'Santiago', family = 'Carmona',
    email = 'santiago.carmona@unil.ch',
    role = c('aut'),
    comment = c(ORCID = '0000-0002-2495-0671'))
  )
Description: This package implements methods to project single-cell RNA-seq data onto a reference atlas, enabling interpretation of unknown cell transcriptomic states in the the context of known, reference states. 
Depends: R(>= 4.3.0)
Imports: 
    Seurat(>= 5.0.0),
    SeuratObject(>= 5.0.0),
    uwot,
    umap,
    Matrix,
    BiocParallel,
    BiocNeighbors,
    patchwork,
    reshape2,
    ggplot2,
    scales,
    pracma,
    STACAS,
    UCell,
    scGate,
    pheatmap,
    RColorBrewer,
    purrr,
    dplyr,
    jsonlite,
    digest
Suggests:
    fastICA,
    EnhancedVolcano,
    plotly,
biocViews:
BugReports: https://github.com/carmonalab/ProjecTILs/issues
URL: https://github.com/carmonalab/ProjecTILs
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2