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<a class="navbar-brand" href="index.html">Carrie Wright, Ph.D.</a>
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<a href="publications.html">Publications</a>
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<div id="section" class="section level3">
<h3></h3>
</div>
<div id="section-1" class="section level3">
<h3></h3>
<p> </p>
</div>
<div id="publications" class="section level2 tabset tabset-fade">
<h2 class="tabset tabset-fade">Publications</h2>
<p> </p>
<div id="first-author-or-senior-author-publications"
class="section level3">
<h3>First Author or Senior Author Publications</h3>
<ol style="list-style-type: decimal">
<li><p><strong>Wright, C.</strong>, Meng, Q., Breshock, M.R., Atta, L.,
Taub, M.A., Jager, L.R., … Hicks, S.C. (2024) Open Case Studies:
Statistics and Data Science Education through Real-World Applications.
Journal of Statistics and Data Science Education, 1–30. <a
href="https://doi.org/10.1080/26939169.2024.2394541">doi:10.1080/26939169.2024.2394541</a></p></li>
<li><p>Afiaz A., Ivanov A.A., Chamberlin J., Hanauer D., Savonen C.L.,
Goldman M.J., Morgan M., Reich M., Getka A., Holmes A., Pati S., Knight
D., Boutros P.C., Bakas S., Caporaso J.G., Del Fiol G., Hochheiser H.,
Haas B., Schloss P.D., Eddy J.A., Albrecht J., Fedorov A., Waldron L.,
Hoffman A.M., Bradshaw R.L., Leek J.T., <strong>Wright C.</strong>
(2024) Best practices to evaluate the impact of biomedical research
software-metric collection beyond citations. Bioinformatics.
40(8):btae469. doi: 10.1093/bioinformatics/btae469. PMID: <a
href="https://pubmed.ncbi.nlm.nih.gov/39067017/">39067017</a></p></li>
<li><p>Hoffman A.M.*, <strong>Wright C.*</strong> Ten simple rules for
teaching an introduction to R. (2024) PLoS Comput Biol. 20(5):e1012018.
doi: 10.1371/journal.pcbi.1012018. PMID: <a
href="PMC11098303.https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11098303/">38753606</a>
* <strong><em>These authors contributed equally to this
work.</em></strong></p></li>
<li><p><strong>Wright C.*</strong>, Rajpurohit A.*, Jaffe A., Burke, E.,
Williams, C., Collado-Torres, L., Kimos, M., Brandon N., Cross A.J.,
Weinberger D. R., and Shin J. H. (2019) Comprehensive assessment of
multiple biases in small RNA sequencing reveals significant differences
in the performance of widely used methods. BMC Genomics. 20(1):513.
PMID: <a
href="https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5870-3">1226924</a>
* <strong><em>These authors contributed equally to this
work.</em></strong></p></li>
<li><p>Rosenberg A.Z.*., <strong>Wright C.*</strong>., Fox-Talbot K.,
Rajpurohit A., Williams C., Porter C., Foulke-Abel J., Kovbasnjuk O.,
McCall M.N., Shin J.H., Haluska, M.K. (2018) xMD-miRNA-seq to generate
near in vivo miRNA expression estimates in colon epithelial cells.
Scientific Reports. 8(1):9783. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/29955168">29955168</a> *
<strong><em>These authors contributed equally to this
work.</em></strong></p></li>
<li><p><strong>Wright C.</strong>, Ross D.A., and Weinberger D.R. (2018)
Small RNAs may answer big questions in mental illness. Biological
Psychiatry. 83(1):e1. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=29173708">29173708</a></p></li>
<li><p><strong>Wright C.</strong>, Shin J.H., Jaffe A., Rajpurohit A.,
Brandon N., Cross A., Hyde T. M., Kleinman, J.E., and Weinberger D.R.
(2017) Altered expression of histamine signaling genes in Autism
Spectrum Disorder. Translational Psychiatry. 7(5):e1126. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=28485729">28485729</a></p></li>
<li><p><strong>Wright C.</strong>, Gupta C. N., Chen J., Patel V.,
Calhoun V.D., Ehrlich S., Wang L., Bustillo J.R., Perrone-Bizzozero N.,
and Turner J.A. (2016) Polymorphisms in MIR137HG and microRNA-137
regulated genes influence gray matter structure in schizophrenia.
Translational Psychiatry. 6:e724. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=26836412">26836412</a></p></li>
<li><p><strong>Wright C.</strong>, Calhoun V., Ehrlich S., Wang L.,
Turner J.A., and Perrone-Bizzozero N. (2015) Meta gene set enrichment
analyses link miR-137-regulated pathways with schizophrenia risk.
Frontiers in Genetics. 6:147. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=25941532">25941532</a></p></li>
<li><p><strong>Wright C.</strong>, Turner J.A., Calhoun V.D. and
Perrone-Bizzozero N. (2013) Potential impact of miR-137 and its targets
in schizophrenia. Frontiers in Genetics. 4:58. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=23637704">23637704</a></p></li>
</ol>
</div>
<div id="secondary-author-publications" class="section level3">
<h3>Secondary Author Publications</h3>
<ol style="list-style-type: decimal">
<li><p>Savonen, C., <strong>Wright, C.</strong>, Hoffman, A.M.,
Humphries, E.M., Cox, K., Tan, F., Leek, J. (2023) Motivation,
inclusivity, and realism should drive data science education. F1000Res
12, 1240, <a
href="https://f1000research.com/articles/12-1240">doi:10.12688/f1000research.134655.1</a></p></li>
<li><p>Humphries, E.M., <strong>Wright, C.</strong>, Hoffman, A.M.,
Savonen, C. & Leek, J.T. (2023) What’s the best chatbot for me?
Researchers put LLMs through their paces. Nature <a
href="https://www.nature.com/articles/d41586-023-03023-4">doi:10.1038/d41586-023-03023-4</a></p></li>
<li><p>Savonen, C., <strong>Wright, C.</strong>, Hoffman, A.M.,
Muschelli, J., Cox, K., Tan, F.J., and Leek, J.T., (2022) Open-source
Tools for Training Resources – OTTR. I Journal of Statistics and Data
Science Education, <a
href="https://doi.org/10.1080/26939169.2022.2118646">doi:
10.1080/26939169.2022.2118646</a></p></li>
<li><p>The Genomic Data Science Community Network (2022). Diversifying
the genomic data science research community. Genome Res. 32, 1231–1241.
PMID: <a
href="https://pubmed.ncbi.nlm.nih.gov/35858750/">35858750</a></p></li>
<li><p>Maphis N.M., Jiang S., Binder J., <strong>Wright C.</strong>,
Gopalan B., Lamb B.T., and Bhasker K. (2017) Whole genome expression
analysis in a mouse model of tauopathy identifies MECP2 as a possible
regulator of tau pathology. Frontiers in molecular neuroscience. 10:69.
PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=28367114">28367114</a></p></li>
<li><p>Patel V.S., Kelly S., <strong>Wright C.</strong>, Gupta C. N.,
Arias-Vasquez A., Perrone-Bizzozero N., Ehrlich S., Wang L., Bustillo
J.R., Morris D., Corvin A., Cannon D.M., McDonald C., Donohoe G.,
Calhoun V.D., and Turner J.A. (2015) MIR137HG risk variant rs1625579
genotype is related to corpus callosum volume in schizophrenia,
Neuroscience Letters. 602: 44. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=26123324">26123324</a></p></li>
<li><p>Gupta C.N., Chen J., Liu J., Damaraju E., <strong>Wright
C.</strong>, Perrone-Bizzozero N.I., Pearlson G., Luo L., Michael A.M.,
Turner J.A., and Calhoun V.D. (2015) Genetic markers of white matter
integrity in schizophrenia revealed by parallel ICA. Front. Hum.
Neurosci. 9:100. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=25784871">25784871</a></p></li>
<li><p>Hass J., Walton E., <strong>Wright C.</strong>, Beyer A., Scholz
M., Turner J., Liu J., Smolka M.N., Roessner V., Sponheim S.R., Gollub
R.L., Calhoun V.D., and Ehrlich S. (2015) Associations between DNA
methylation and schizophrenia-related intermediate phenotypes - a gene
set enrichment analysis. Prog Neuropsychopharmacol Biol Psychiatry.
59:31. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=25598502">25598502</a></p></li>
<li><p>Savage D.D., Rosenberg M.J., Wolff C.R., Akers K.G., El-Emawy A.,
Staples M.C., Varaschin R.K., <strong>Wright C.</strong>, Seidel J.L.,
and Caldwell K.K. (2010) Effects of a novel cognition-enhancing agent on
fetal ethanol-induced learning deficits. Alcoholism: Clinical and
Experimental Research. 34: 1793. PMID: <a
href="https://www.ncbi.nlm.nih.gov/pubmed/?term=20626729">20626729</a></p></li>
</ol>
</div>
<div id="preprints" class="section level3">
<h3>Preprints</h3>
<!-- 1. Savonen, C., **Wright, C.**, Hoffman, A.M., Muschelli, J., Cox, K., Tan, F.J., and Leek, J.T., (2022). -->
<!-- Open-source Tools for Training Resources – OTTR. [arXiv:2203.07083](https://arxiv.org/abs/2203.07083).
3. Savonen, C., **Wright, C.**, Hoffman, A.M., Humphries, E.M., Cox, K.E.L., Tan, F.J., and Leek, J.T. Motivation, inclusivity, and realism should drive data science education (2023). [arXiv:2305.06213](https://arxiv.org/abs/2305.06213)-->
<ol style="list-style-type: decimal">
<li><p>Hoffman, A. & <strong>Wright, C</strong>. Ten simple rules
for teaching introduction to R. (2023) <a
href="https://osf.io/preprints/edarxiv/g45vz/">edarxiv/g45vz</a>.</p></li>
<li><p><strong>Wright, C.</strong>, Meng Q., Breshock, M.R., Atta, L.,
Taub, M.A., Jager, L.R., Muschelli, J., and Hicks, S.C. Open Case
Studies: Statistics and Data Science Education through Real-World
Applications (2023). <a
href="https://arxiv.org/abs/2301.05298">arXiv.2301.05298</a></p></li>
<li><p>Afiaz, A., Ivanov, A., Chamberlin, J., Hanauer D., Savonen, C.,
Goldman, M.J., Morgan, M., Reich, M., Getka, A., Holmes, A., Pati, S.,
Knight, D., Boutros, P.C., Bakas, S., Caporaso, J.G., Del Fiol, G.,
Hochheiser, H., Haas, B., Schloss, P.D., Eddy, J.A., Albrecht, J.,
Fedorov, A., Waldron, L., Hoffman, A.M., Bradshaw, R.L., Leek, J.T.,
<strong>Wright, C.</strong> Evaluation of software impact designed for
biomedical research: Are we measuring what’s meaningful? (2023). <a
href="https://arxiv.org/abs/2306.03255">arXiv:2306.03255</a></p></li>
</ol>
</div>
<div id="other-media" class="section level3">
<h3>Other Media</h3>
<ol style="list-style-type: decimal">
<li><p>An article in the <a href="https://magazine.jhsph.edu/">Hopkins
Bloomberg Public Health Magazine</a> from April 15, 2022 that mentions a
course developed by C.Wright titled <a
href="https://magazine.jhsph.edu/2022/how-biased-data-and-algorithms-can-harm-health">How
biased data and algorithms can harm health</a></p></li>
<li><p>A post about the ITCR training network in the Cancer Data Science
Pulse featured February 1, 2022 titled <a
href="https://datascience.cancer.gov/news-events/blog/ncis-itcr-training-network-puts-cancer-research-tools-and-training-your-fingertips">NCI’s
ITCR Training Network Puts Cancer Research Tools and Training at Your
Fingertips</a></p></li>
</ol>
</div>
</div>
</div>
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// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open');
});
});
</script>
<!-- code folding -->
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>