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Non-AlphaFold colors #4

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T22-teletraan opened this issue Jun 25, 2024 · 2 comments
Open

Non-AlphaFold colors #4

T22-teletraan opened this issue Jun 25, 2024 · 2 comments

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@T22-teletraan
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In some of my predicted structures created from AlphaFold 3, PyMOL shows colors such as purple or green. Is it meant to be there, or is this an error of some sort?

Attaching an image to show an example.
Screenshot 2024-06-25 105407

Hope to hear from someone soon!

@T22-teletraan
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Found another example for green coloration.

image

@NicoFrL
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NicoFrL commented Jul 23, 2024

The original version of @cbalbin-bio excludes values that match exactly 90, 70, and 50. It's unfortunate when this happens, as sometimes the pLDDT values match these exact numbers.

I have submitted a pull request with code modifications to address this issue and update the script. You can find the details of the changes in the pull request.
Best

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