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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 23 32

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    38 49

Repositories

Showing 10 of 482 repositories
  • ixa-epi-isolation Public
    CDCgov/ixa-epi-isolation’s past year of commit activity
    Rust 1 Apache-2.0 2 44 (2 issues need help) 8 Updated Aug 14, 2025
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 80 CC0-1.0 42 1,205 129 Updated Aug 14, 2025
  • forecasttools Public

    R tools for short-term forecasting

    CDCgov/forecasttools’s past year of commit activity
    R 4 Apache-2.0 2 31 2 Updated Aug 14, 2025
  • covid19-forecast-hub Public

    A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.

    CDCgov/covid19-forecast-hub’s past year of commit activity
    R 17 Apache-2.0 22 12 2 Updated Aug 14, 2025
  • phylophoenix Public

    🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

    CDCgov/phylophoenix’s past year of commit activity
    Python 6 Apache-2.0 0 1 1 Updated Aug 14, 2025
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 78 Apache-2.0 32 13 0 Updated Aug 14, 2025
  • hubverse-annotator Public

    Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models.

    CDCgov/hubverse-annotator’s past year of commit activity
    Python 3 Apache-2.0 0 18 4 Updated Aug 14, 2025
  • NEDSS-DataReporting Public

    Data Near Real Time Reporting micro services for Modernized NBS System

    CDCgov/NEDSS-DataReporting’s past year of commit activity
    TSQL 2 Apache-2.0 5 0 5 Updated Aug 14, 2025
  • dibbs-ecr-refiner Public

    The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.

    CDCgov/dibbs-ecr-refiner’s past year of commit activity
    XSLT 3 Apache-2.0 3 36 1 Updated Aug 14, 2025
  • eMKF Public
    CDCgov/eMKF’s past year of commit activity
    SAS 3 Apache-2.0 4 0 0 Updated Aug 13, 2025
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