Include Metamorphosys .prop file for generating the subset

[ldorigo]

Hello, it would be very helpful if you could include the .prop file for the exact settings you used to generate the UMLS subset that you use in st21pv.

[ldorigo]

Here's one if you want to include it. I selected the same semantic types as the paper (and descendants). For source vocabularies, I assumed the names in the readme refer to family, so if there were several ontologies in the same family, I added them all (excluding non-english ones). This isn't stated explicitly in the paper or on this repository, so it would be nice to have a clarification from your end.

# Configuration Properties File 
#Sat Mar 19 16:00:57 CET 2022
mmsys_output_stream=gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream
gov.nih.nlm.umls.mmsys.filter.SuppressibleFilter.remove_obsolete_data=false
gov.nih.nlm.umls.mmsys.filter.SuppressibleFilter.confirm_selections=true
install_lvg=false
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.calculate_md5s=false
release_version=2017AA
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.subset_dir=/data/umls/st21pv/2017AA/META
gov.nih.nlm.umls.mmsys.filter.SuppressibleFilter.suppressed_sabttys=ALT|AB;CCPSS|TC;CDT|OP;CPT|AB;FMA|AB;FMA|OP;GO|IS;GO|MTH_IS;GO|MTH_OET;GO|MTH_OP;GO|OET;GO|OP;HCDT|AB;HCDT|OA;HCDT|OP;HCPCS|AB;HCPCS|AM;HCPCS|OA;HCPCS|OAM;HCPCS|OM;HCPCS|OP;HCPT|AB;HCPT|AM;HCPT|OA;HCPT|OP;HL7V3.0|ONP;HL7V3.0|OP;HPO|IS;HPO|OET;HPO|OP;ICD10|HS;ICD10|PS;ICD10AE|HS;ICD10AE|PS;ICD10AM|PS;ICD10AMAE|PS;ICD10CM|AB;ICD10PCS|AB;ICD10PCS|HS;ICD9CM|AB;ICPC|CS;ICPC|PS;ICPC2EENG|AB;ICPC2P|MTH_OP;ICPC2P|MTH_OPN;ICPC2P|MTH_PT;ICPC2P|OP;ICPC2P|OPN;LNC|LO;LNC|MTH_LO;LNC|OLC;LNC|OOSN;LNC-DE-AT|LO;LNC-DE-CH|OOSN;LNC-DE-DE|LO;LNC-EL-GR|LO;LNC-ES-AR|LO;LNC-ES-AR|OOSN;LNC-ES-CH|OOSN;LNC-ES-ES|LO;LNC-ET-EE|LO;LNC-FR-BE|LO;LNC-FR-CA|LO;LNC-FR-CH|OOSN;LNC-FR-FR|LO;LNC-FR-FR|OLC;LNC-IT-CH|OOSN;LNC-IT-IT|LO;LNC-KO-KR|LO;LNC-NL-NL|LO;LNC-PT-BR|LO;LNC-PT-BR|OLC;LNC-PT-BR|OOSN;LNC-RU-RU|LO;LNC-TR-TR|LO;LNC-ZH-CN|LO;MDR|AB;MDR|MTH_OL;MDR|OL;MDRCZE|AB;MDRCZE|OL;MDRDUT|AB;MDRDUT|OL;MDRFRE|AB;MDRFRE|OL;MDRGER|AB;MDRGER|OL;MDRHUN|AB;MDRHUN|OL;MDRITA|AB;MDRITA|OL;MDRJPN|OL;MDRJPN|OLJKN;MDRJPN|OLJKN1;MDRPOR|AB;MDRPOR|OL;MDRSPA|AB;MDRSPA|OL;MSH|DEV;MSH|DSV;MSH|QAB;MSH|QEV;MSH|QSV;MSHGER|DSV;MSHNOR|DSV;MTHICPC2EAE|AB;NCBI|AUN;NCBI|UAUN;NCI|OP;NCI_NICHD|OP;NEU|ACR;NEU|IS;NEU|OP;PDQ|IS;PDQ|OP;RCD|AA;RCD|AB;RCD|AS;RCD|IS;RCD|OA;RCD|OP;RCDAE|AA;RCDAE|AB;RCDAE|IS;RCDAE|OA;RCDAE|OP;RCDSA|AB;RCDSA|IS;RCDSA|OA;RCDSA|OP;RCDSY|AB;RCDSY|IS;RCDSY|OA;RCDSY|OP;SCTSPA|IS;SCTSPA|MTH_IS;SCTSPA|MTH_OAF;SCTSPA|MTH_OAP;SCTSPA|MTH_OAS;SCTSPA|MTH_OF;SCTSPA|MTH_OP;SCTSPA|OAF;SCTSPA|OAP;SCTSPA|OAS;SCTSPA|OF;SCTSPA|OP;SNMI|HX;SNMI|PX;SNMI|SX;SNOMEDCT_US|IS;SNOMEDCT_US|MTH_IS;SNOMEDCT_US|MTH_OAF;SNOMEDCT_US|MTH_OAP;SNOMEDCT_US|MTH_OAS;SNOMEDCT_US|MTH_OF;SNOMEDCT_US|MTH_OP;SNOMEDCT_US|OAF;SNOMEDCT_US|OAP;SNOMEDCT_US|OAS;SNOMEDCT_US|OF;SNOMEDCT_US|OP;SNOMEDCT_VET|IS;SNOMEDCT_VET|OAF;SNOMEDCT_VET|OAP;SNOMEDCT_VET|OAS;SNOMEDCT_VET|OF;SNOMEDCT_VET|OP
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.remove_mth_only=false
install_net=true
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.build_indexes=true
gov.nih.nlm.umls.mmsys.filter.SourceListFilter.remove_selected_sources=false
gov.nih.nlm.umls.mmsys.filter.SourceListFilter.enforce_family_selection=true
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.add_unicode_bom=false
meta_destination_uri=/data/umls/st21pv/2017AA/META
gov.nih.nlm.umls.mmsys.filter.SourceListFilter.ip_associations=
default_subset_config_uri=/data/umls/2017AA-full/config/2017AA/user.a.prop
versioned_output=false
install_lex=true
install_umls=true
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.database=
mmsys_input_stream=gov.nih.nlm.umls.mmsys.io.NLMFileMetamorphoSysInputStream
meta_source_uri=/data/umls/2017AA-full
gov.nih.nlm.umls.mmsys.filter.SourceListFilter.base_url=http\://www.nlm.nih.gov/research/umls/sourcereleasedocs/
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.max_field_length=4000
gov.nih.nlm.umls.mmsys.filter.SemanticTypesFilter.selected_semantic_types=Virus;Bacterium;Anatomical Structure;Embryonic Structure;Congenital Abnormality;Acquired Abnormality;Fully Formed Anatomical Structure;Body Part, Organ, or Organ Component;Tissue;Cell;Cell Component;Gene or Genome;Anatomical Abnormality;Body Substance;Body System;Finding;Laboratory or Test Result;Sign or Symptom;Injury or Poisoning;Biologic Function;Physiologic Function;Organism Function;Mental Process;Organ or Tissue Function;Cell Function;Molecular Function;Genetic Function;Pathologic Function;Disease or Syndrome;Mental or Behavioral Dysfunction;Cell or Molecular Dysfunction;Experimental Model of Disease;Neoplastic Process;Health Care Activity;Laboratory Procedure;Diagnostic Procedure;Therapeutic or Preventive Procedure;Research Activity;Molecular Biology Research Technique;Medical Device;Drug Delivery Device;Spatial Concept;Body Location or Region;Body Space or Junction;Geographic Area;Molecular Sequence;Nucleotide Sequence;Amino Acid Sequence;Carbohydrate Sequence;Biomedical Occupation or Discipline;Organization;Health Care Related Organization;Professional Society;Self-help or Relief Organization;Professional or Occupational Group;Population Group;Chemical;Chemical Viewed Structurally;Organic Chemical;Steroid;Eicosanoid;Nucleic Acid, Nucleoside, or Nucleotide;Organophosphorus Compound;Amino Acid, Peptide, or Protein;Carbohydrate;Lipid;Chemical Viewed Functionally;Pharmacologic Substance;Biomedical or Dental Material;Biologically Active Substance;Neuroreactive Substance or Biogenic Amine;Hormone;Enzyme;Vitamin;Immunologic Factor;Indicator, Reagent, or Diagnostic Aid;Hazardous or Poisonous Substance;Receptor;Antibiotic;Element, Ion, or Isotope;Inorganic Chemical;Food;Intellectual Product;Regulation or Law;Classification;Clinical Attribute;Eukaryote;Plant;Fungus;Animal;Vertebrate;Amphibian;Bird;Fish;Reptile;Mammal;Human
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.versioned_output=false
install_meta=true
gov.nih.nlm.umls.mmsys.filter.SuppressibleFilter.remove_editor_suppressible_data=false
gov.nih.nlm.umls.mmsys.filter.SuppressibleFilter.remove_source_tty_suppressible_data=false
umls_destination_uri=/data/umls/st21pv
gov.nih.nlm.umls.mmsys.filter.SourceListFilter.selected_sources=CPT|CPT;FMA|FMA;GO|GO;HCPT|CPT;HGNC|HGNC;HPO|HPO;ICD10AE|ICD10;ICD10CM|ICD10CM;ICD10|ICD10;ICD9CM|ICD9CM;MDR|MDR;MSH|MSH;MTH|MTH;MTHICD9|ICD9CM;NCBI|NCBI;NCI|NCI;NCI_BRIDG|NCI;NCI_BioC|NCI;NCI_CDC|NCI;NCI_CDISC|NCI;NCI_CRCH|NCI;NCI_CTCAE|NCI;NCI_CTEP-SDC|NCI;NCI_CareLex|NCI;NCI_DCP|NCI;NCI_DICOM|NCI;NCI_DTP|NCI;NCI_FDA|NCI;NCI_GAIA|NCI;NCI_GENC|NCI;NCI_ICH|NCI;NCI_JAX|NCI;NCI_KEGG|NCI;NCI_NCI-GLOSS|NCI;NCI_NCI-HL7|NCI;NCI_NCPDP|NCI;NCI_NICHD|NCI;NCI_PI-RADS|NCI;NCI_PID|NCI;NCI_RENI|NCI;NCI_UCUM|NCI;NCI_ZFin|NCI;NDDF|NDDF;NDFRT|NDFRT;NDFRT_FDASPL|NDFRT;NDFRT_FMTSME|NDFRT;OMIM|OMIM;RXNORM|RXNORM;SNOMEDCT_US|SNOMEDCT;SNOMEDCT_VET|SNOMEDCT
gov.nih.nlm.umls.mmsys.filter.SemanticTypesFilter.any_sty=true
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.truncate=false
gov.nih.nlm.umls.mmsys.io.RRFMetamorphoSysOutputStream.character_encoding=UTF-8
active_filters=gov.nih.nlm.umls.mmsys.filter.PrecedenceFilter;gov.nih.nlm.umls.mmsys.filter.SemanticTypesFilter;gov.nih.nlm.umls.mmsys.filter.SourceListFilter;gov.nih.nlm.umls.mmsys.filter.SuppressibleFilter
gov.nih.nlm.umls.mmsys.filter.PrecedenceFilter.precedence=MTH|PN;RXNORM|MIN;MSH|MH;MSH|TQ;MSH|PEP;MSH|ET;MSH|XQ;MSH|PXQ;MSH|NM;MTHCMSFRF|PT;RXNORM|SCD;RXNORM|SBD;RXNORM|SCDG;RXNORM|SBDG;RXNORM|IN;RXNORM|PSN;RXNORM|SCDF;RXNORM|SBDF;RXNORM|SCDC;RXNORM|DFG;RXNORM|DF;RXNORM|SBDC;RXNORM|BN;RXNORM|PIN;RXNORM|BPCK;RXNORM|GPCK;RXNORM|SY;RXNORM|TMSY;SNOMEDCT_US|PT;SNOMEDCT_US|FN;SNOMEDCT_US|SY;SNOMEDCT_US|PTGB;SNOMEDCT_US|SYGB;SNOMEDCT_US|MTH_PT;SNOMEDCT_US|MTH_FN;SNOMEDCT_US|MTH_SY;SNOMEDCT_US|MTH_PTGB;SNOMEDCT_US|MTH_SYGB;SNOMEDCT_US|SB;SNOMEDCT_US|XM;SNOMEDCT_VET|PT;SNOMEDCT_VET|FN;SNOMEDCT_VET|SY;SNOMEDCT_VET|SB;HPO|PT;HPO|SY;HPO|ET;HPO|OP;HPO|IS;HPO|OET;NCBI|SCN;MTHSPL|MTH_RXN_DP;MTHSPL|DP;MTHSPL|SU;ATC|RXN_PT;ATC|PT;VANDF|PT;VANDF|CD;VANDF|IN;MDDB|CD;USPMG|HC;USPMG|PT;MMX|MTH_RXN_CD;MMX|MTH_RXN_BD;MMX|CD;MMX|BD;DRUGBANK|IN;DRUGBANK|SY;DRUGBANK|FSY;MSH|N1;MSH|PCE;MSH|CE;CPM|PT;NEU|PT;NEU|ACR;NEU|SY;NEU|OP;NEU|IS;FMA|PT;FMA|SY;FMA|AB;FMA|OP;UWDA|PT;UWDA|SY;UMD|PT;UMD|SY;UMD|ET;UMD|RT;GS|CD;MMSL|CD;GS|MTH_RXN_BD;GS|BD;MMSL|MTH_RXN_BD;MMSL|BD;MMSL|SC;MMSL|MS;MMSL|GN;MMSL|BN;ATC|RXN_IN;ATC|IN;MMSL|IN;VANDF|AB;GS|MTH_RXN_CD;VANDF|MTH_RXN_CD;NDDF|MTH_RXN_CDC;NDDF|CDC;NDDF|CDD;NDDF|CDA;NDDF|IN;NDDF|DF;NDFRT|MTH_RXN_RHT;NDFRT|HT;NDFRT|FN;NDFRT|PT;NDFRT|SY;NDFRT|AB;SPN|PT;MDR|PT;MDR|MTH_PT;MDR|HG;MDR|MTH_HG;MDR|OS;MDR|MTH_OS;MDR|HT;MDR|MTH_HT;MDR|LLT;MDR|MTH_LLT;MDR|SMQ;MDR|MTH_SMQ;MDR|AB;CPT|PT;CPT|SY;CPT|ETCLIN;CPT|POS;CPT|GLP;CPT|ETCF;CPT|MP;HCPT|PT;HCPCS|PT;CDT|PT;CDT|OP;MVX|PT;CVX|PT;CVX|RXN_PT;CVX|AB;HCDT|PT;HCPCS|MP;HCPT|MP;ICD10AE|PT;ICD10|PT;ICD10AE|PX;ICD10|PX;ICD10AE|PS;ICD10|PS;ICD10AMAE|PT;ICD10AM|PT;ICD10AMAE|PX;ICD10AM|PX;ICD10AMAE|PS;ICD10AM|PS;OMIM|PT;OMIM|PHENO;OMIM|PHENO_ET;OMIM|PTAV;OMIM|PTCS;OMIM|ETAL;OMIM|ET;OMIM|HT;OMIM|ACR;MEDCIN|PT;MEDCIN|FN;MEDCIN|XM;MEDCIN|SY;HGNC|PT;HGNC|ACR;HGNC|MTH_ACR;HGNC|NA;HGNC|SYN;ICNP|PT;ICNP|MTH_PT;ICNP|XM;PNDS|PT;PNDS|HT;PDQ|PT;PDQ|HT;PDQ|PSC;PDQ|SY;PDQ|MTH_SY;CHV|PT;MEDLINEPLUS|PT;NCI|PT;NCI|SY;NCI_BioC|SY;NCI_PI-RADS|PT;NCI_CareLex|PT;NCI_CareLex|SY;NCI_CDC|PT;NCI_CDISC|PT;NCI_CDISC|SY;NCI|CSN;NCI_DCP|PT;NCI_DCP|SY;NCI|DN;NCI_DTP|PT;NCI_DTP|SY;NCI|FBD;NCI_FDA|AB;NCI_FDA|PT;NCI_FDA|SY;NCI|HD;NCI_GENC|PT;NCI_GENC|CA2;NCI_GENC|CA3;NCI_CRCH|PT;NCI_CRCH|SY;NCI_DICOM|PT;NCI_BRIDG|PT;NCI_RENI|DN;NCI_BioC|PT;NCI|CCN;NCI_CTCAE|PT;NCI_CTEP-SDC|PT;NCI_CTEP-SDC|SY;NCI|CCS;NCI_JAX|PT;NCI_JAX|SY;NCI_KEGG|PT;NCI_ICH|AB;NCI_ICH|PT;NCI_NCI-HL7|AB;NCI_NCI-HL7|PT;NCI_UCUM|AB;NCI_UCUM|PT;NCI_KEGG|AB;NCI_KEGG|SY;NCI_NICHD|PT;NCI_NICHD|SY;NCI_PID|PT;NCI_NCPDP|PT;NCI_GAIA|PT;NCI_GAIA|SY;NCI_ZFin|PT;NCI_NCI-GLOSS|PT;NCI_ICH|SY;NCI_NCI-HL7|SY;NCI_UCUM|SY;NCI_NCPDP|SY;NCI_ZFin|SY;NCI_NCI-GLOSS|SY;NCI|OP;NCI_NICHD|OP;NCI|AD;NCI|CA2;NCI|CA3;NCI|BN;NCI|AB;MTHICPC2EAE|PT;ICPC2EENG|PT;MTHICPC2ICD10AE|PT;SOP|PT;ICF|HT;ICF|PT;ICF|MTH_HT;ICF|MTH_PT;ICF-CY|HT;ICF-CY|PT;ICF-CY|MTH_HT;ICF-CY|MTH_PT;ICPC2ICD10ENG|PT;ICPC|PX;ICPC|PT;ICPC|PS;ICPC|PC;ICPC|CX;ICPC|CP;ICPC|CS;ICPC|CC;ICPC2EENG|CO;ICPC|CO;MTHICPC2EAE|AB;ICPC2EENG|AB;ICPC2P|PTN;ICPC2P|MTH_PTN;ICPC2P|PT;ICPC2P|MTH_PT;ICPC2P|OPN;ICPC2P|MTH_OPN;ICPC2P|OP;ICPC2P|MTH_OP;AOT|PT;AOT|ET;HCPCS|OP;HCDT|OP;HCPT|OP;HCPCS|OM;HCPCS|OAM;GO|PT;GO|MTH_PT;GO|ET;GO|MTH_ET;GO|SY;GO|MTH_SY;GO|OP;GO|MTH_OP;GO|OET;GO|MTH_OET;GO|IS;GO|MTH_IS;PDQ|ET;PDQ|CU;PDQ|MTH_LV;PDQ|LV;PDQ|MTH_AB;PDQ|MTH_ACR;PDQ|ACR;PDQ|AB;PDQ|BD;PDQ|FBD;PDQ|OP;PDQ|CCN;PDQ|CHN;PDQ|MTH_CHN;PDQ|IS;PDQ|MTH_BD;NCBI|USN;NCBI|USY;NCBI|SY;NCBI|UCN;NCBI|CMN;NCBI|UE;NCBI|EQ;NCBI|AUN;NCBI|UAUN;LNC|LN;LNC|MTH_LN;LNC|OSN;LNC|CN;LNC|MTH_CN;LNC|LPN;LNC|LPDN;LNC|HC;LNC|HS;LNC|OLC;LNC|LC;LNC|XM;LNC|LS;LNC|LO;LNC|MTH_LO;LNC|OOSN;LNC|LA;ICD10CM|PT;ICD9CM|PT;ICD10CM|XM;MDR|OL;MDR|MTH_OL;ICD10CM|HT;ICD9CM|HT;CCS_10|HT;CCS_10|MD;CCS_10|MV;CCS_10|SD;CCS_10|SP;CCS_10|XM;CCS|HT;CCS|MD;CCS|SD;CCS|MV;CCS|SP;CCS|XM;ICPC2ICD10ENG|XM;ICD10AE|HT;ICD10PCS|PT;ICD10PCS|PX;ICD10PCS|HX;ICD10PCS|MTH_HX;ICD10PCS|HT;ICD10PCS|XM;ICD10PCS|HS;ICD10PCS|AB;ICD10|HT;ICD10AE|HX;ICD10|HX;ICD10AE|HS;ICD10|HS;ICD10AMAE|HT;ICD10AM|HT;UMD|HT;ICPC|HT;NUCCPT|PT;HL7V3.0|CSY;HL7V3.0|PT;HL7V2.5|PT;HL7V3.0|CDO;HL7V3.0|VS;HL7V3.0|BR;HL7V3.0|CPR;HL7V3.0|CR;HL7V3.0|NPT;HL7V3.0|OP;HL7V3.0|ONP;HL7V2.5|HTN;CPT|HT;CDT|HT;MTHHH|HT;CCC|PT;CCC|HT;NIC|IV;NIC|HC;NANDA-I|PT;NANDA-I|HT;NANDA-I|HC;NANDA-I|RT;OMS|MTH_SI;OMS|PR;OMS|TG;OMS|HT;OMS|PQ;OMS|IVC;OMS|SI;OMS|SCALE;NIC|AC;NOC|OC;NOC|MTH_ID;NOC|ID;NIC|HT;NOC|HT;NOC|HC;CCC|MTH_HT;CCC|MP;ALT|PT;ALT|HT;MTH|CV;MTH|XM;MTH|PT;MTH|SY;MTH|RT;ICD10CM|ET;MTHICD9|ET;ICD10CM|AB;ICD9CM|AB;PSY|PT;PSY|HT;PSY|ET;MEDLINEPLUS|ET;MEDLINEPLUS|SY;MEDLINEPLUS|HT;LCH_NW|PT;LCH|PT;MSH|HT;MSH|HS;MSH|DEV;MSH|DSV;MSH|QAB;MSH|QEV;MSH|QSV;MSH|PM;LCH_NW|XM;CPT|AB;HCPT|AB;HCPCS|AB;WHO|PT;WHO|OS;WHO|HT;WHO|IT;SNMI|PT;SNMI|PX;SNMI|HT;SNMI|HX;SNMI|RT;SNMI|SY;SNMI|SX;SNMI|AD;SNM|PT;SNM|RT;SNM|HT;SNM|SY;SNM|RS;RCD|PT;RCD|OP;RCD|SY;RCD|IS;RCD|AT;RCD|AS;RCD|AB;RCDSA|PT;RCDSY|PT;RCDAE|PT;RCDSA|SY;RCDSY|SY;RCDAE|SY;RCDSA|OP;RCDSY|OP;RCDAE|OP;RCDSA|IS;RCDSY|IS;RCDAE|IS;RCDAE|AT;RCDSA|AB;RCDSY|AB;RCDAE|AB;RCDSA|OA;RCDSY|OA;RCDAE|OA;RCD|OA;RCDAE|AA;RCD|AA;CSP|PT;CSP|SY;CSP|ET;CSP|AB;MTH|DT;HCPT|OA;HCPT|AM;HCPCS|OA;HCPCS|AM;HCDT|AB;ALT|AB;HCDT|OA;CHV|SY;RXNORM|ET;SNOMEDCT_VET|OAP;SNOMEDCT_VET|OP;SNOMEDCT_US|OAP;SNOMEDCT_US|OP;SNOMEDCT_VET|OAF;SNOMEDCT_VET|OF;SNOMEDCT_US|OAF;SNOMEDCT_US|OF;SNOMEDCT_VET|OAS;SNOMEDCT_VET|IS;SNOMEDCT_US|OAS;SNOMEDCT_US|IS;SNOMEDCT_US|MTH_OAP;SNOMEDCT_US|MTH_OP;SNOMEDCT_US|MTH_OAF;SNOMEDCT_US|MTH_OF;SNOMEDCT_US|MTH_OAS;SNOMEDCT_US|MTH_IS;DSM-5|DC10;DSM-5|DC9;DXP|DI;DXP|FI;DXP|SY;RAM|PT;RAM|RT;ULT|PT;BI|PT;BI|AB;BI|SY;BI|RT;PCDS|GO;PCDS|OR;PCDS|PR;PCDS|CO;PCDS|HX;PCDS|HT;MTHMST|PT;MTHMST|SY;DDB|PT;DDB|SY;CST|PT;COSTAR|PT;CST|SC;CST|HT;CST|GT;CCPSS|TX;CCPSS|TC;CCPSS|PT;CCPSS|MP;AOD|DE;AOD|DS;AOD|XD;AOD|FN;AOD|ET;AOD|ES;AOD|EX;AOD|NP;AOD|NS;AOD|NX;QMR|PT;JABL|PC;JABL|PT;JABL|SS;JABL|SY;AIR|FI;AIR|DI;AIR|SY;AIR|HT;PPAC|DO;PPAC|CL;PPAC|AC;PPAC|ST;PPAC|TA;MCM|PT;MCM|RT;SCTSPA|PT;SCTSPA|FN;SCTSPA|SY;SCTSPA|MTH_PT;SCTSPA|MTH_FN;SCTSPA|MTH_SY;SCTSPA|SB;SCTSPA|OP;SCTSPA|OAF;SCTSPA|OAP;SCTSPA|OAS;SCTSPA|OF;SCTSPA|IS;SCTSPA|MTH_OP;SCTSPA|MTH_OAF;SCTSPA|MTH_OAP;SCTSPA|MTH_OAS;SCTSPA|MTH_OF;SCTSPA|MTH_IS;MSHPOR|MH;MSHPOR|PEP;MSHPOR|ET;MSHSPA|MH;MSHSPA|PEP;MSHSPA|ET;MSHCZE|MH;MSHCZE|PEP;MSHCZE|ET;MSHDUT|MH;MSHSWE|MH;MSHSWE|TQ;MSHNOR|MH;MSHGER|MH;MSHNOR|PEP;MSHGER|PEP;MSHNOR|DSV;MSHGER|DSV;MSHNOR|ET;MSHGER|ET;MSHFIN|MH;MSHLAV|MH;MSHSCR|MH;MSHFRE|MH;MSHLAV|PEP;MSHSCR|PEP;MSHFRE|PEP;MSHLAV|EP;MSHSCR|ET;MSHFRE|ET;MSHITA|MH;MSHITA|PEP;MSHITA|ET;MSHJPN|PT;MSHPOL|MH;MSHRUS|MH;MSHJPN|SY;KCD5|HT;TKMT|PT;KCD5|PT;MSHPOL|SY;MSHRUS|SY;MSHDUT|SY;MDRSPA|PT;MDRSPA|HG;MDRSPA|HT;MDRSPA|LLT;MDRSPA|OS;MDRSPA|SMQ;MDRSPA|OL;MDRSPA|AB;MDRDUT|PT;MDRDUT|HG;MDRDUT|HT;MDRDUT|LLT;MDRDUT|OS;MDRDUT|SMQ;MDRDUT|OL;MDRDUT|AB;MDRFRE|PT;MDRFRE|HG;MDRFRE|HT;MDRFRE|LLT;MDRFRE|SMQ;MDRFRE|OS;MDRFRE|OL;MDRFRE|AB;MDRGER|PT;MDRGER|HG;MDRGER|HT;MDRGER|LLT;MDRGER|SMQ;MDRGER|OS;MDRGER|OL;MDRGER|AB;MDRITA|PT;MDRITA|HG;MDRITA|HT;MDRITA|LLT;MDRITA|SMQ;MDRITA|OS;MDRITA|OL;MDRITA|AB;MDRJPN|PT;MDRJPN|PTJKN;MDRJPN|PTJKN1;MDRJPN|HG;MDRJPN|HGJKN;MDRJPN|HGJKN1;MDRJPN|HT;MDRJPN|HTJKN;MDRJPN|HTJKN1;MDRJPN|LLT;MDRJPN|LLTJKN;MDRJPN|LLTJKN1;MDRJPN|OS;MDRJPN|SMQ;MDRJPN|OL;MDRJPN|OLJKN;MDRJPN|OLJKN1;MDRCZE|PT;MDRHUN|PT;MDRPOR|PT;MDRCZE|HG;MDRHUN|HG;MDRPOR|HG;MDRCZE|HT;MDRHUN|HT;MDRPOR|HT;MDRCZE|LLT;MDRHUN|LLT;MDRPOR|LLT;MDRCZE|OS;MDRHUN|OS;MDRPOR|OS;MDRCZE|SMQ;MDRHUN|SMQ;MDRPOR|SMQ;MDRCZE|OL;MDRHUN|OL;MDRPOR|OL;MDRCZE|AB;MDRHUN|AB;MDRPOR|AB;MDRJPN|OSJKN;MDRJPN|OSJKN1;WHOFRE|HT;WHOGER|HT;WHOPOR|HT;WHOSPA|HT;LNC-DE-CH|OSN;LNC-DE-CH|OOSN;LNC-DE-DE|LN;LNC-DE-DE|LO;LNC-EL-GR|LN;LNC-EL-GR|LO;LNC-ES-AR|LN;LNC-ES-AR|OSN;LNC-ES-AR|LO;LNC-ES-AR|OOSN;LNC-ES-CH|OSN;LNC-ES-CH|OOSN;LNC-ES-ES|LN;LNC-ES-ES|LO;LNC-ET-EE|LN;LNC-ET-EE|LO;LNC-FR-BE|LN;LNC-FR-BE|LO;LNC-FR-CA|LN;LNC-FR-CA|LO;LNC-FR-CH|OSN;LNC-FR-CH|OOSN;LNC-FR-FR|LN;LNC-FR-FR|LC;LNC-FR-FR|OLC;LNC-FR-FR|LO;LNC-IT-CH|OSN;LNC-IT-CH|OOSN;LNC-IT-IT|LN;LNC-IT-IT|LO;LNC-KO-KR|LN;LNC-KO-KR|LO;LNC-NL-NL|LN;LNC-NL-NL|LO;LNC-PT-BR|LN;LNC-PT-BR|OSN;LNC-PT-BR|LC;LNC-PT-BR|OLC;LNC-PT-BR|LO;LNC-PT-BR|OOSN;LNC-RU-RU|LN;LNC-RU-RU|LO;LNC-TR-TR|LN;LNC-TR-TR|LO;LNC-ZH-CN|LN;LNC-ZH-CN|LO;LNC-DE-AT|LN;LNC-DE-AT|LO;WHOFRE|PT;WHOGER|PT;WHOPOR|PT;WHOSPA|PT;WHOFRE|IT;WHOGER|IT;WHOPOR|IT;WHOSPA|IT;WHOFRE|OS;WHOGER|OS;WHOPOR|OS;WHOSPA|OS;CPTSP|PT;DMDUMD|PT;DMDUMD|ET;DMDUMD|RT;DMDICD10|PT;DMDICD10|HT;ICPCBAQ|PT;ICPCDAN|PT;ICPC2EDUT|PT;ICD10DUT|PT;ICD10DUT|HT;ICPC2ICD10DUT|PT;ICPCDUT|PT;ICPCFIN|PT;ICPCFRE|PT;ICPCGER|PT;ICPCHEB|PT;ICPCHUN|PT;ICPCITA|PT;ICPCNOR|PT;ICPCPOR|PT;ICPCSPA|PT;ICPCSWE|PT;ICPCBAQ|CP;ICPCDAN|CP;ICPCDUT|CP;ICPCFIN|CP;ICPCFRE|CP;ICPCGER|CP;ICPCHEB|CP;ICPCHUN|CP;ICPCITA|CP;ICPCNOR|CP;ICPCPOR|CP;ICPCSPA|CP;ICPCSWE|CP;MTHMSTFRE|PT;MTHMSTITA|PT;SRC|RPT;SRC|RHT;SRC|RAB;SRC|RSY;SRC|VPT;SRC|VAB;SRC|VSY;SRC|SSN;
gov.nih.nlm.umls.mmsys.filter.SemanticTypesFilter.remove_selected_stys=false
gov.nih.nlm.umls.mmsys.io.NLMFileMetamorphoSysInputStream.meta_source_uri=/data/umls/2017AA-full
gov.nih.nlm.umls.mmsys.filter.SuppressibleFilter.confirm_default_suppressible_sabttys=ALT|AB;CCPSS|TC;CDT|OP;CPT|AB;FMA|AB;FMA|OP;GO|IS;GO|MTH_IS;GO|MTH_OET;GO|MTH_OP;GO|OET;GO|OP;HCDT|AB;HCDT|OA;HCDT|OP;HCPCS|AB;HCPCS|AM;HCPCS|OA;HCPCS|OAM;HCPCS|OM;HCPCS|OP;HCPT|AB;HCPT|AM;HCPT|OA;HCPT|OP;HL7V3.0|ONP;HL7V3.0|OP;HPO|IS;HPO|OET;HPO|OP;ICD10|HS;ICD10|PS;ICD10AE|HS;ICD10AE|PS;ICD10AM|PS;ICD10AMAE|PS;ICD10CM|AB;ICD10PCS|AB;ICD10PCS|HS;ICD9CM|AB;ICPC|CS;ICPC|PS;ICPC2EENG|AB;ICPC2P|MTH_OP;ICPC2P|MTH_OPN;ICPC2P|MTH_PT;ICPC2P|OP;ICPC2P|OPN;LNC|LO;LNC|MTH_LO;LNC|OLC;LNC|OOSN;LNC-DE-AT|LO;LNC-DE-CH|OOSN;LNC-DE-DE|LO;LNC-EL-GR|LO;LNC-ES-AR|LO;LNC-ES-AR|OOSN;LNC-ES-CH|OOSN;LNC-ES-ES|LO;LNC-ET-EE|LO;LNC-FR-BE|LO;LNC-FR-CA|LO;LNC-FR-CH|OOSN;LNC-FR-FR|LO;LNC-FR-FR|OLC;LNC-IT-CH|OOSN;LNC-IT-IT|LO;LNC-KO-KR|LO;LNC-NL-NL|LO;LNC-PT-BR|LO;LNC-PT-BR|OLC;LNC-PT-BR|OOSN;LNC-RU-RU|LO;LNC-TR-TR|LO;LNC-ZH-CN|LO;MDR|AB;MDR|MTH_OL;MDR|OL;MDRCZE|AB;MDRCZE|OL;MDRDUT|AB;MDRDUT|OL;MDRFRE|AB;MDRFRE|OL;MDRGER|AB;MDRGER|OL;MDRHUN|AB;MDRHUN|OL;MDRITA|AB;MDRITA|OL;MDRJPN|OL;MDRJPN|OLJKN;MDRJPN|OLJKN1;MDRPOR|AB;MDRPOR|OL;MDRSPA|AB;MDRSPA|OL;MSH|DEV;MSH|DSV;MSH|QAB;MSH|QEV;MSH|QSV;MSHGER|DSV;MSHNOR|DSV;MTHICPC2EAE|AB;NCBI|AUN;NCBI|UAUN;NCI|OP;NCI_NICHD|OP;NEU|ACR;NEU|IS;NEU|OP;PDQ|IS;PDQ|OP;RCD|AA;RCD|AB;RCD|AS;RCD|IS;RCD|OA;RCD|OP;RCDAE|AA;RCDAE|AB;RCDAE|IS;RCDAE|OA;RCDAE|OP;RCDSA|AB;RCDSA|IS;RCDSA|OA;RCDSA|OP;RCDSY|AB;RCDSY|IS;RCDSY|OA;RCDSY|OP;SCTSPA|IS;SCTSPA|MTH_IS;SCTSPA|MTH_OAF;SCTSPA|MTH_OAP;SCTSPA|MTH_OAS;SCTSPA|MTH_OF;SCTSPA|MTH_OP;SCTSPA|OAF;SCTSPA|OAP;SCTSPA|OAS;SCTSPA|OF;SCTSPA|OP;SNMI|HX;SNMI|PX;SNMI|SX;SNOMEDCT_US|IS;SNOMEDCT_US|MTH_IS;SNOMEDCT_US|MTH_OAF;SNOMEDCT_US|MTH_OAP;SNOMEDCT_US|MTH_OAS;SNOMEDCT_US|MTH_OF;SNOMEDCT_US|MTH_OP;SNOMEDCT_US|OAF;SNOMEDCT_US|OAP;SNOMEDCT_US|OAS;SNOMEDCT_US|OF;SNOMEDCT_US|OP;SNOMEDCT_VET|IS;SNOMEDCT_VET|OAF;SNOMEDCT_VET|OAP;SNOMEDCT_VET|OAS;SNOMEDCT_VET|OF;SNOMEDCT_VET|OP
gov.nih.nlm.umls.mmsys.filter.SourceListFilter.enforce_dep_source_selection=true