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segment.py
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segment.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
import argparse
import json
import logging
import math
import os
from os.path import exists, join, split
import threading
import time
import numpy as np
import shutil
import sys
from PIL import Image
import torch
from torch import nn
import torch.backends.cudnn as cudnn
import torch.optim as optim
from torchvision import datasets, transforms
from torch.autograd import Variable
import drn
import data_transforms as transforms
try:
from modules import batchnormsync
except ImportError:
pass
FORMAT = "[%(asctime)-15s %(filename)s:%(lineno)d %(funcName)s] %(message)s"
logging.basicConfig(format=FORMAT)
logger = logging.getLogger(__name__)
logger.setLevel(logging.DEBUG)
CITYSCAPE_PALETTE = np.asarray([
[128, 64, 128],
[244, 35, 232],
[70, 70, 70],
[102, 102, 156],
[190, 153, 153],
[153, 153, 153],
[250, 170, 30],
[220, 220, 0],
[107, 142, 35],
[152, 251, 152],
[70, 130, 180],
[220, 20, 60],
[255, 0, 0],
[0, 0, 142],
[0, 0, 70],
[0, 60, 100],
[0, 80, 100],
[0, 0, 230],
[119, 11, 32],
[0, 0, 0]], dtype=np.uint8)
TRIPLET_PALETTE = np.asarray([
[0, 0, 0, 255],
[217, 83, 79, 255],
[91, 192, 222, 255]], dtype=np.uint8)
def fill_up_weights(up):
w = up.weight.data
f = math.ceil(w.size(2) / 2)
c = (2 * f - 1 - f % 2) / (2. * f)
for i in range(w.size(2)):
for j in range(w.size(3)):
w[0, 0, i, j] = \
(1 - math.fabs(i / f - c)) * (1 - math.fabs(j / f - c))
for c in range(1, w.size(0)):
w[c, 0, :, :] = w[0, 0, :, :]
class DRNSeg(nn.Module):
def __init__(self, model_name, classes, pretrained_model=None,
pretrained=True, use_torch_up=False):
super(DRNSeg, self).__init__()
model = drn.__dict__.get(model_name)(
pretrained=pretrained, num_classes=1000)
pmodel = nn.DataParallel(model)
if pretrained_model is not None:
pmodel.load_state_dict(pretrained_model)
self.base = nn.Sequential(*list(model.children())[:-2])
self.seg = nn.Conv2d(model.out_dim, classes,
kernel_size=1, bias=True)
self.softmax = nn.LogSoftmax()
m = self.seg
n = m.kernel_size[0] * m.kernel_size[1] * m.out_channels
m.weight.data.normal_(0, math.sqrt(2. / n))
m.bias.data.zero_()
if use_torch_up:
self.up = nn.UpsamplingBilinear2d(scale_factor=8)
else:
up = nn.ConvTranspose2d(classes, classes, 16, stride=8, padding=4,
output_padding=0, groups=classes,
bias=False)
fill_up_weights(up)
up.weight.requires_grad = False
self.up = up
def forward(self, x):
x = self.base(x)
x = self.seg(x)
y = self.up(x)
return self.softmax(y), x
def optim_parameters(self, memo=None):
for param in self.base.parameters():
yield param
for param in self.seg.parameters():
yield param
class SegList(torch.utils.data.Dataset):
def __init__(self, data_dir, phase, transforms, list_dir=None,
out_name=False):
self.list_dir = data_dir if list_dir is None else list_dir
self.data_dir = data_dir
self.out_name = out_name
self.phase = phase
self.transforms = transforms
self.image_list = None
self.label_list = None
self.bbox_list = None
self.read_lists()
def __getitem__(self, index):
data = [Image.open(join(self.data_dir, self.image_list[index]))]
if self.label_list is not None:
data.append(Image.open(
join(self.data_dir, self.label_list[index])))
data = list(self.transforms(*data))
if self.out_name:
if self.label_list is None:
data.append(data[0][0, :, :])
data.append(self.image_list[index])
return tuple(data)
def __len__(self):
return len(self.image_list)
def read_lists(self):
image_path = join(self.list_dir, self.phase + '_images.txt')
label_path = join(self.list_dir, self.phase + '_labels.txt')
assert exists(image_path)
self.image_list = [line.strip() for line in open(image_path, 'r')]
if exists(label_path):
self.label_list = [line.strip() for line in open(label_path, 'r')]
assert len(self.image_list) == len(self.label_list)
class SegListMS(torch.utils.data.Dataset):
def __init__(self, data_dir, phase, transforms, scales, list_dir=None):
self.list_dir = data_dir if list_dir is None else list_dir
self.data_dir = data_dir
self.phase = phase
self.transforms = transforms
self.image_list = None
self.label_list = None
self.bbox_list = None
self.read_lists()
self.scales = scales
def __getitem__(self, index):
data = [Image.open(join(self.data_dir, self.image_list[index]))]
w, h = data[0].size
if self.label_list is not None:
data.append(Image.open(
join(self.data_dir, self.label_list[index])))
# data = list(self.transforms(*data))
out_data = list(self.transforms(*data))
ms_images = [self.transforms(data[0].resize((int(w * s), int(h * s)),
Image.BICUBIC))[0]
for s in self.scales]
out_data.append(self.image_list[index])
out_data.extend(ms_images)
return tuple(out_data)
def __len__(self):
return len(self.image_list)
def read_lists(self):
image_path = join(self.list_dir, self.phase + '_images.txt')
label_path = join(self.list_dir, self.phase + '_labels.txt')
assert exists(image_path)
self.image_list = [line.strip() for line in open(image_path, 'r')]
if exists(label_path):
self.label_list = [line.strip() for line in open(label_path, 'r')]
assert len(self.image_list) == len(self.label_list)
def validate(val_loader, model, criterion, eval_score=None, print_freq=10):
batch_time = AverageMeter()
losses = AverageMeter()
score = AverageMeter()
# switch to evaluate mode
model.eval()
end = time.time()
for i, (input, target) in enumerate(val_loader):
if type(criterion) in [torch.nn.modules.loss.L1Loss,
torch.nn.modules.loss.MSELoss]:
target = target.float()
input = input.cuda()
target = target.cuda(async=True)
input_var = torch.autograd.Variable(input, volatile=True)
target_var = torch.autograd.Variable(target, volatile=True)
# compute output
output = model(input_var)[0]
loss = criterion(output, target_var)
# measure accuracy and record loss
# prec1, prec5 = accuracy(output.data, target, topk=(1, 5))
losses.update(loss.data[0], input.size(0))
if eval_score is not None:
score.update(eval_score(output, target_var), input.size(0))
# measure elapsed time
batch_time.update(time.time() - end)
end = time.time()
if i % print_freq == 0:
logger.info('Test: [{0}/{1}]\t'
'Time {batch_time.val:.3f} ({batch_time.avg:.3f})\t'
'Loss {loss.val:.4f} ({loss.avg:.4f})\t'
'Score {score.val:.3f} ({score.avg:.3f})'.format(
i, len(val_loader), batch_time=batch_time, loss=losses,
score=score))
logger.info(' * Score {top1.avg:.3f}'.format(top1=score))
return score.avg
class AverageMeter(object):
"""Computes and stores the average and current value"""
def __init__(self):
self.reset()
def reset(self):
self.val = 0
self.avg = 0
self.sum = 0
self.count = 0
def update(self, val, n=1):
self.val = val
self.sum += val * n
self.count += n
self.avg = self.sum / self.count
def accuracy(output, target):
"""Computes the precision@k for the specified values of k"""
# batch_size = target.size(0) * target.size(1) * target.size(2)
_, pred = output.max(1)
pred = pred.view(1, -1)
target = target.view(1, -1)
correct = pred.eq(target)
correct = correct[target != 255]
correct = correct.view(-1)
score = correct.float().sum(0).mul(100.0 / correct.size(0))
return score.data[0]
def train(train_loader, model, criterion, optimizer, epoch,
eval_score=None, print_freq=10):
batch_time = AverageMeter()
data_time = AverageMeter()
losses = AverageMeter()
scores = AverageMeter()
# switch to train mode
model.train()
end = time.time()
for i, (input, target) in enumerate(train_loader):
# measure data loading time
data_time.update(time.time() - end)
if type(criterion) in [torch.nn.modules.loss.L1Loss,
torch.nn.modules.loss.MSELoss]:
target = target.float()
input = input.cuda()
target = target.cuda(async=True)
input_var = torch.autograd.Variable(input)
target_var = torch.autograd.Variable(target)
# compute output
output = model(input_var)[0]
loss = criterion(output, target_var)
# measure accuracy and record loss
# prec1, prec5 = accuracy(output.data, target, topk=(1, 5))
losses.update(loss.data[0], input.size(0))
if eval_score is not None:
scores.update(eval_score(output, target_var), input.size(0))
# compute gradient and do SGD step
optimizer.zero_grad()
loss.backward()
optimizer.step()
# measure elapsed time
batch_time.update(time.time() - end)
end = time.time()
if i % print_freq == 0:
logger.info('Epoch: [{0}][{1}/{2}]\t'
'Time {batch_time.val:.3f} ({batch_time.avg:.3f})\t'
'Data {data_time.val:.3f} ({data_time.avg:.3f})\t'
'Loss {loss.val:.4f} ({loss.avg:.4f})\t'
'Score {top1.val:.3f} ({top1.avg:.3f})'.format(
epoch, i, len(train_loader), batch_time=batch_time,
data_time=data_time, loss=losses, top1=scores))
def save_checkpoint(state, is_best, filename='checkpoint.pth.tar'):
torch.save(state, filename)
if is_best:
shutil.copyfile(filename, 'model_best.pth.tar')
def train_seg(args):
batch_size = args.batch_size
num_workers = args.workers
crop_size = args.crop_size
print(' '.join(sys.argv))
for k, v in args.__dict__.items():
print(k, ':', v)
single_model = DRNSeg(args.arch, args.classes, None,
pretrained=True)
if args.pretrained:
single_model.load_state_dict(torch.load(args.pretrained))
model = torch.nn.DataParallel(single_model).cuda()
criterion = nn.NLLLoss2d(ignore_index=255)
criterion.cuda()
# Data loading code
data_dir = args.data_dir
info = json.load(open(join(data_dir, 'info.json'), 'r'))
normalize = transforms.Normalize(mean=info['mean'],
std=info['std'])
t = []
if args.random_rotate > 0:
t.append(transforms.RandomRotate(args.random_rotate))
if args.random_scale > 0:
t.append(transforms.RandomScale(args.random_scale))
t.extend([transforms.RandomCrop(crop_size),
transforms.RandomHorizontalFlip(),
transforms.ToTensor(),
normalize])
train_loader = torch.utils.data.DataLoader(
SegList(data_dir, 'train', transforms.Compose(t),
list_dir=args.list_dir),
batch_size=batch_size, shuffle=True, num_workers=num_workers,
pin_memory=True, drop_last=True
)
val_loader = torch.utils.data.DataLoader(
SegList(data_dir, 'val', transforms.Compose([
transforms.RandomCrop(crop_size),
transforms.ToTensor(),
normalize,
]), list_dir=args.list_dir),
batch_size=batch_size, shuffle=False, num_workers=num_workers,
pin_memory=True, drop_last=True
)
# define loss function (criterion) and pptimizer
optimizer = torch.optim.SGD(single_model.optim_parameters(),
args.lr,
momentum=args.momentum,
weight_decay=args.weight_decay)
cudnn.benchmark = True
best_prec1 = 0
start_epoch = 0
# optionally resume from a checkpoint
if args.resume:
if os.path.isfile(args.resume):
print("=> loading checkpoint '{}'".format(args.resume))
checkpoint = torch.load(args.resume)
start_epoch = checkpoint['epoch']
best_prec1 = checkpoint['best_prec1']
model.load_state_dict(checkpoint['state_dict'])
print("=> loaded checkpoint '{}' (epoch {})"
.format(args.resume, checkpoint['epoch']))
else:
print("=> no checkpoint found at '{}'".format(args.resume))
if args.evaluate:
validate(val_loader, model, criterion, eval_score=accuracy)
return
for epoch in range(start_epoch, args.epochs):
lr = adjust_learning_rate(args, optimizer, epoch)
logger.info('Epoch: [{0}]\tlr {1:.06f}'.format(epoch, lr))
# train for one epoch
train(train_loader, model, criterion, optimizer, epoch,
eval_score=accuracy)
# evaluate on validation set
prec1 = validate(val_loader, model, criterion, eval_score=accuracy)
is_best = prec1 > best_prec1
best_prec1 = max(prec1, best_prec1)
checkpoint_path = os.path.join(args.save_path, 'checkpoint_latest.pth.tar')
save_checkpoint({
'epoch': epoch + 1,
'arch': args.arch,
'state_dict': model.state_dict(),
'best_prec1': best_prec1,
}, is_best, filename=checkpoint_path)
if (epoch + 1) % args.save_iter == 0:
history_path = os.path.join(args.save_path, 'checkpoint_{:03d}.pth.tar'.format(epoch + 1))
shutil.copyfile(checkpoint_path, history_path)
def adjust_learning_rate(args, optimizer, epoch):
"""
Sets the learning rate to the initial LR decayed by 10 every 30 epochs
"""
if args.lr_mode == 'step':
lr = args.lr * (0.1 ** (epoch // args.step))
elif args.lr_mode == 'poly':
lr = args.lr * (1 - epoch / args.epochs) ** 0.9
else:
raise ValueError('Unknown lr mode {}'.format(args.lr_mode))
for param_group in optimizer.param_groups:
param_group['lr'] = lr
return lr
def fast_hist(pred, label, n):
k = (label >= 0) & (label < n)
return np.bincount(
n * label[k].astype(int) + pred[k], minlength=n ** 2).reshape(n, n)
def per_class_iu(hist):
return np.diag(hist) / (hist.sum(1) + hist.sum(0) - np.diag(hist))
def save_output_images(predictions, filenames, output_dir):
"""
Saves a given (B x C x H x W) into an image file.
If given a mini-batch tensor, will save the tensor as a grid of images.
"""
# pdb.set_trace()
for ind in range(len(filenames)):
im = Image.fromarray(predictions[ind].astype(np.uint8))
fn = os.path.join(output_dir, filenames[ind][:-4] + '.png')
out_dir = split(fn)[0]
if not exists(out_dir):
os.makedirs(out_dir)
im.save(fn)
def save_colorful_images(predictions, filenames, output_dir, palettes):
"""
Saves a given (B x C x H x W) into an image file.
If given a mini-batch tensor, will save the tensor as a grid of images.
"""
for ind in range(len(filenames)):
im = Image.fromarray(palettes[predictions[ind].squeeze()])
fn = os.path.join(output_dir, filenames[ind][:-4] + '.png')
out_dir = split(fn)[0]
if not exists(out_dir):
os.makedirs(out_dir)
im.save(fn)
def test(eval_data_loader, model, num_classes,
output_dir='pred', has_gt=True, save_vis=False):
model.eval()
batch_time = AverageMeter()
data_time = AverageMeter()
end = time.time()
hist = np.zeros((num_classes, num_classes))
for iter, (image, label, name) in enumerate(eval_data_loader):
data_time.update(time.time() - end)
image_var = Variable(image, requires_grad=False, volatile=True)
final = model(image_var)[0]
_, pred = torch.max(final, 1)
pred = pred.cpu().data.numpy()
batch_time.update(time.time() - end)
if save_vis:
save_output_images(pred, name, output_dir)
save_colorful_images(
pred, name, output_dir + '_color',
TRIPLET_PALETTE if num_classes == 3 else CITYSCAPE_PALETTE)
if has_gt:
label = label.numpy()
hist += fast_hist(pred.flatten(), label.flatten(), num_classes)
logger.info('===> mAP {mAP:.3f}'.format(
mAP=round(np.nanmean(per_class_iu(hist)) * 100, 2)))
end = time.time()
logger.info('Eval: [{0}/{1}]\t'
'Time {batch_time.val:.3f} ({batch_time.avg:.3f})\t'
'Data {data_time.val:.3f} ({data_time.avg:.3f})\t'
.format(iter, len(eval_data_loader), batch_time=batch_time,
data_time=data_time))
if has_gt: #val
ious = per_class_iu(hist) * 100
logger.info(' '.join('{:.03f}'.format(i) for i in ious))
return round(np.nanmean(ious), 2)
def resize_4d_tensor(tensor, width, height):
tensor_cpu = tensor.cpu().numpy()
if tensor.size(2) == height and tensor.size(3) == width:
return tensor_cpu
out_size = (tensor.size(0), tensor.size(1), height, width)
out = np.empty(out_size, dtype=np.float32)
def resize_one(i, j):
out[i, j] = np.array(
Image.fromarray(tensor_cpu[i, j]).resize(
(width, height), Image.BILINEAR))
def resize_channel(j):
for i in range(tensor.size(0)):
out[i, j] = np.array(
Image.fromarray(tensor_cpu[i, j]).resize(
(width, height), Image.BILINEAR))
# workers = [threading.Thread(target=resize_one, args=(i, j))
# for i in range(tensor.size(0)) for j in range(tensor.size(1))]
workers = [threading.Thread(target=resize_channel, args=(j,))
for j in range(tensor.size(1))]
for w in workers:
w.start()
for w in workers:
w.join()
# for i in range(tensor.size(0)):
# for j in range(tensor.size(1)):
# out[i, j] = np.array(
# Image.fromarray(tensor_cpu[i, j]).resize(
# (w, h), Image.BILINEAR))
# out = tensor.new().resize_(*out.shape).copy_(torch.from_numpy(out))
return out
def test_ms(eval_data_loader, model, num_classes, scales,
output_dir='pred', has_gt=True, save_vis=False):
model.eval()
batch_time = AverageMeter()
data_time = AverageMeter()
end = time.time()
hist = np.zeros((num_classes, num_classes))
num_scales = len(scales)
for iter, input_data in enumerate(eval_data_loader):
data_time.update(time.time() - end)
if has_gt:
name = input_data[2]
label = input_data[1]
else:
name = input_data[1]
h, w = input_data[0].size()[2:4]
images = [input_data[0]]
images.extend(input_data[-num_scales:])
# pdb.set_trace()
outputs = []
for image in images:
image_var = Variable(image, requires_grad=False, volatile=True)
final = model(image_var)[0]
outputs.append(final.data)
final = sum([resize_4d_tensor(out, w, h) for out in outputs])
# _, pred = torch.max(torch.from_numpy(final), 1)
# pred = pred.cpu().numpy()
pred = final.argmax(axis=1)
batch_time.update(time.time() - end)
if save_vis:
save_output_images(pred, name, output_dir)
save_colorful_images(pred, name, output_dir + '_color',
CITYSCAPE_PALETTE)
if has_gt:
label = label.numpy()
hist += fast_hist(pred.flatten(), label.flatten(), num_classes)
logger.info('===> mAP {mAP:.3f}'.format(
mAP=round(np.nanmean(per_class_iu(hist)) * 100, 2)))
end = time.time()
logger.info('Eval: [{0}/{1}]\t'
'Time {batch_time.val:.3f} ({batch_time.avg:.3f})\t'
'Data {data_time.val:.3f} ({data_time.avg:.3f})\t'
.format(iter, len(eval_data_loader), batch_time=batch_time,
data_time=data_time))
if has_gt: #val
ious = per_class_iu(hist) * 100
logger.info(' '.join('{:.03f}'.format(i) for i in ious))
return round(np.nanmean(ious), 2)
def test_seg(args):
batch_size = args.batch_size
num_workers = args.workers
phase = args.phase
for k, v in args.__dict__.items():
print(k, ':', v)
single_model = DRNSeg(args.arch, args.classes, pretrained_model=None,
pretrained=False)
if args.pretrained:
single_model.load_state_dict(torch.load(args.pretrained))
model = torch.nn.DataParallel(single_model).cuda()
data_dir = args.data_dir
info = json.load(open(join(data_dir, 'info.json'), 'r'))
normalize = transforms.Normalize(mean=info['mean'], std=info['std'])
scales = [0.5, 0.75, 1.25, 1.5, 1.75]
if args.ms:
dataset = SegListMS(data_dir, phase, transforms.Compose([
transforms.ToTensor(),
normalize,
]), scales, list_dir=args.list_dir)
else:
dataset = SegList(data_dir, phase, transforms.Compose([
transforms.ToTensor(),
normalize,
]), list_dir=args.list_dir, out_name=True)
test_loader = torch.utils.data.DataLoader(
dataset,
batch_size=batch_size, shuffle=False, num_workers=num_workers,
pin_memory=False
)
cudnn.benchmark = True
# optionally resume from a checkpoint
start_epoch = 0
if args.resume:
if os.path.isfile(args.resume):
logger.info("=> loading checkpoint '{}'".format(args.resume))
checkpoint = torch.load(args.resume)
start_epoch = checkpoint['epoch']
best_prec1 = checkpoint['best_prec1']
model.load_state_dict(checkpoint['state_dict'])
logger.info("=> loaded checkpoint '{}' (epoch {})"
.format(args.resume, checkpoint['epoch']))
else:
logger.info("=> no checkpoint found at '{}'".format(args.resume))
out_dir = '{}_{:03d}_{}'.format(args.arch, start_epoch, phase)
if len(args.test_suffix) > 0:
out_dir += '_' + args.test_suffix
if args.ms:
out_dir += '_ms'
if args.ms:
mAP = test_ms(test_loader, model, args.classes, save_vis=True,
has_gt=phase != 'test' or args.with_gt,
output_dir=out_dir,
scales=scales)
else:
mAP = test(test_loader, model, args.classes, save_vis=True,
has_gt=phase != 'test' or args.with_gt, output_dir=out_dir)
logger.info('mAP: %f', mAP)
def parse_args():
# Training settings
parser = argparse.ArgumentParser(description='')
parser.add_argument('cmd', choices=['train', 'test'])
parser.add_argument('-d', '--data-dir', default=None, required=True)
parser.add_argument('-l', '--list-dir', default=None,
help='List dir to look for train_images.txt etc. '
'It is the same with --data-dir if not set.')
parser.add_argument('-c', '--classes', default=0, type=int)
parser.add_argument('-s', '--crop-size', default=0, type=int)
parser.add_argument('--step', type=int, default=200)
parser.add_argument('--arch')
parser.add_argument('--batch-size', type=int, default=64, metavar='N',
help='input batch size for training (default: 64)')
parser.add_argument('--epochs', type=int, default=10, metavar='N',
help='number of epochs to train (default: 10)')
parser.add_argument('--lr', type=float, default=0.01, metavar='LR',
help='learning rate (default: 0.01)')
parser.add_argument('--lr-mode', type=str, default='step')
parser.add_argument('--momentum', type=float, default=0.9, metavar='M',
help='SGD momentum (default: 0.9)')
parser.add_argument('--weight-decay', '--wd', default=1e-4, type=float,
metavar='W', help='weight decay (default: 1e-4)')
parser.add_argument('-e', '--evaluate', dest='evaluate',
action='store_true',
help='evaluate model on validation set')
parser.add_argument('--resume', default='', type=str, metavar='PATH',
help='path to latest checkpoint (default: none)')
parser.add_argument('--pretrained', dest='pretrained',
default='', type=str, metavar='PATH',
help='use pre-trained model')
parser.add_argument('--save_path', default='', type=str, metavar='PATH',
help='output path for training checkpoints')
parser.add_argument('--save_iter', default=1, type=int,
help='number of training iterations between'
'checkpoint history saves')
parser.add_argument('-j', '--workers', type=int, default=8)
parser.add_argument('--load-release', dest='load_rel', default=None)
parser.add_argument('--phase', default='val')
parser.add_argument('--random-scale', default=0, type=float)
parser.add_argument('--random-rotate', default=0, type=int)
parser.add_argument('--bn-sync', action='store_true')
parser.add_argument('--ms', action='store_true',
help='Turn on multi-scale testing')
parser.add_argument('--with-gt', action='store_true')
parser.add_argument('--test-suffix', default='', type=str)
args = parser.parse_args()
assert args.classes > 0
print(' '.join(sys.argv))
print(args)
if args.bn_sync:
drn.BatchNorm = batchnormsync.BatchNormSync
return args
def main():
args = parse_args()
if args.cmd == 'train':
train_seg(args)
elif args.cmd == 'test':
test_seg(args)
if __name__ == '__main__':
main()