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Assertion error in running hifiasm-0.19.5 #476
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confirmed, same error here |
Sorry for the late reply. Would any of you share the bin files with me? I guess it should be a small bug. Thanks in advance. |
This assertion error could be avoid by changing the aidx, pidx, etc back to -1. |
@chhylp123 |
Hi @ptrebert, could you please share the bin files with me? Thanks again. |
Sorry could you please let me know what are the aidx and pidx? That would be very helpful. |
@chhylp123 I prepared a Globus share, can you remind me of your globus id? |
@ptrebert I was using: hcheng@jimmy.harvard.edu. Thanks a lot. |
Globus doesn't find user under that email? But I used it anyway for now, hope it's the right one ... |
@wzboy1984 @ptrebert Could you please have a try with current github HEAD ( |
Confirmed. The same error: $ hifiasm_0.19.5 -v [M::rescall_ul_pipeline::] ==> # reads: 1572170, # bases: 0, # fully corrected reads: 1482668 I will check 0.19.5-r593 as you (chhylp123) suggested. |
Thanks. Hope the r593 works. |
@chhylp123 Thank you. |
Got it. Thanks for sharing the results! |
@alex-kozik thanks for testing; sorry, I just didn't get to that in time |
Dear author,
I encountered the following error when I tried running hifiasm-0.19.5 on a hifi+ONT dataset.
my command line is: hifiasm-0.19.5/hifiasm -o xxx -t 32 hifi.fasta.gz --ul ont.fasta.gz
I also tried running the lastest master version with same parameters, keeping the previous generated middle files. And I got the same error message.
What should I do to avoid this error?
Looking forward to your reply.
Best wishes,
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