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logsumexp was finally removed from scipy.misc and moved to scipy.special #1161

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dprada opened this issue May 20, 2019 · 2 comments
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logsumexp was finally removed from scipy.misc and moved to scipy.special #1161

dprada opened this issue May 20, 2019 · 2 comments

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@dprada
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dprada commented May 20, 2019

Hi!

The following line does not longer work:

from scipy.misc import logsumexp

It has to be replaced by:

from scipy.special import logsumexp

This was already reported in scipy/scipy#9546.
@dprada dprada mentioned this issue May 20, 2019
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@dprada
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dprada commented May 20, 2019 •
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I just saw that this was almost fixed already. The only file with the wrong instruction is multistateanalyzer.py. A PR was submitted with the small modification.

@andrrizzi
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This was fixed in YANK in #1162. A PR for openmmtools has also been opened (choderalab/openmmtools#423).

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@dprada @andrrizzi