Merge pull request #365 from sgsmob/pylint

add pylintrc file to each indicator

Author: krivard

_delphi_utils_python/.pylintrc

@@ -1,8 +1,21 @@
-[DESIGN]
 
-min-public-methods=1
+[MESSAGES CONTROL]
 
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
 
-[MESSAGES CONTROL]
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
 
-disable=R0801, C0330, E1101, E0611, C0114, C0116, C0103, R0913, R0914, W0702
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

_template_python/.pylintrc

@@ -0,0 +1,21 @@
+
+[MESSAGES CONTROL]
+
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
+
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
+
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

cdc_covidnet/.pylintrc

@@ -0,0 +1,21 @@
+
+[MESSAGES CONTROL]
+
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
+
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
+
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

changehc/.pylintrc

@@ -0,0 +1,21 @@
+
+[MESSAGES CONTROL]
+
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
+
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
+
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

claims_hosp/.pylintrc

@@ -0,0 +1,21 @@
+
+[MESSAGES CONTROL]
+
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
+
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
+
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

combo_cases_and_deaths/.pylintrc

@@ -0,0 +1,21 @@
+
+[MESSAGES CONTROL]
+
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
+
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
+
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

emr_hosp/.pylintrc

@@ -0,0 +1,21 @@
+
+[MESSAGES CONTROL]
+
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
+
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
+
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

google_health/.pylintrc

@@ -1,8 +1,21 @@
-[DESIGN]
 
-min-public-methods=1
+[MESSAGES CONTROL]
 
+disable=logging-format-interpolation,
+    too-many-locals,
+    too-many-arguments,
+    # Allow pytest functions to be part of a class.
+    no-self-use,
+    # Allow pytest classes to have one test.
+    too-few-public-methods
 
-[MESSAGES CONTROL]
+[BASIC]
+
+# Allow arbitrarily short-named variables.
+variable-rgx=[a-z_][a-z0-9_]*
+argument-rgx=[a-z_][a-z0-9_]*
+
+[DESIGN]
 
-disable=R0801, C0330, E1101, E0611, C0114, C0116, C0103, R0913, R0914, W0702
+# Don't complain about pytest "unused" arguments.
+ignored-argument-names=(_.*|run_as_module)

google_health/delphi_google_health/pull_api.py

@@ -77,7 +77,7 @@ def query(self, start_date: str, end_date: str, geo_id, dma=False) -> dict:
             start_date,
             end_date,
         )
-        data = self.service.getTimelinesForHealth(**params).execute()
+        data = self.service.getTimelinesForHealth(**params).execute() #pylint: disable=no-member
 
         return data
 

google_health/delphi_google_health/smooth.py

@@ -60,11 +60,12 @@ def _left_gauss_linear(s: np.ndarray, h=10, impute=False, minval=None) -> np.nda
 
     n = len(s)
     t = np.zeros_like(s, dtype=np.float64)
-    X = np.vstack([np.ones(n), np.arange(n)]).T
+    X = np.vstack([np.ones(n), np.arange(n)]).T #pylint: disable=invalid-name
     for idx in range(n):
         wts = np.exp(-((np.arange(idx + 1) - idx) ** 2) / (h ** 2))
-        XwX = np.dot(X[: (idx + 1), :].T * wts, X[: (idx + 1), :])
-        Xwy = np.dot(X[: (idx + 1), :].T * wts, s[: (idx + 1)].reshape(-1, 1))
+        XwX = np.dot(X[: (idx + 1), :].T * wts, X[: (idx + 1), :]) #pylint: disable=invalid-name
+        Xwy = np.dot(X[: (idx + 1), :].T * wts, #pylint: disable=invalid-name
+                     s[: (idx + 1)].reshape(-1, 1))
         try:
             beta = np.linalg.solve(XwX, Xwy)
             t[idx] = np.dot(X[: (idx + 1), :], beta)[-1]