Merge pull request #624 from cmu-delphi/release/delphi-epidata-0.1.3

Release Delphi Epidata 0.1.3

Author: krivard

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.1.2
+current_version = 0.1.3
 commit = False
 tag = False
 

docs/api/afhsb.md

@@ -31,7 +31,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | --- | --- | --- |
 | `auth` | password | string |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/regions.txt), [state](../../labels/states.txt), or 3-letter country code labels |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt), [state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt), or 3-letter country code labels |
 | `flu_types` | flu types | `list` of disjoint (`flu1`, `flu2-flu1`, `flu3-flu2`, `ili-flu3`) or subset (`flu2`, `flu3`, `ili`) flu type labels |
 
 ## Response

docs/api/cdc.md

@@ -31,7 +31,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | --- | --- | --- |
 | `auth` | password | string |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/regions.txt)/[state](../../labels/states.txt) labels <!-- TODO: check --> |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)/[state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt) labels <!-- TODO: check --> |
 
 ## Response
 

docs/api/covid_hosp.md

@@ -143,7 +143,7 @@ https://delphi.cmu.edu/epidata/covid_hosp_state_timeseries/?states=MA&dates=2020
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following sample shows how to import the library and fetch MA on 2020-05-10
 (per most recent issue).
 

docs/api/covid_hosp_facility.md

@@ -190,7 +190,7 @@ https://delphi.cmu.edu/epidata/covid_hosp_facility/?hospital_pks=390119&collecti
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following sample shows how to import the library and fetch Moses Taylor
 Hospital (Scranton, PA) on the first collection week of December 2020 (per most
 recent issue).

docs/api/covid_hosp_facility_lookup.md

@@ -99,7 +99,7 @@ https://delphi.cmu.edu/epidata/covid_hosp_facility_lookup/?city=southlake
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following sample shows how to import the library and fetch facilities in
 the city of Southlake (TX).
 

docs/api/covidcast-signals/fb-survey.md

@@ -1,10 +1,10 @@
 ---
-title: Symptom Surveys
+title: COVID-19 Trends and Impact Survey
 parent: Data Sources and Signals
 grand_parent: COVIDcast Epidata API
 ---
 
-# Symptom Surveys
+# COVID-19 Trends and Impact Survey
 {: .no_toc}
 
 * **Source name:** `fb-survey`
@@ -17,9 +17,10 @@ grand_parent: COVIDcast Epidata API
 
 ## Overview
 
-This data source is based on symptom surveys run by the Delphi group at Carnegie
-Mellon. Facebook directs a random sample of its users to these surveys, which
-are voluntary. Users age 18 or older are eligible to complete the surveys, and
+This data source is based on the [COVID-19 Trends and Impact Survey
+(CTIS)](../../symptom-survey/) run by the Delphi group at Carnegie Mellon.
+Facebook directs a random sample of its users to these surveys, which are
+voluntary. Users age 18 or older are eligible to complete the surveys, and
 their survey responses are held by CMU and are sharable with other health
 researchers under a data use agreement. No individual survey responses are
 shared back to Facebook. See our [surveys
@@ -575,7 +576,7 @@ $$
 
 where $$\pi_i$$ is an estimated probability (produced by Facebook) that an
 individual with the same state-by-age-gender profile as user $$i$$ would be a
-Facebook user and take our CMU survey. The adjustment we make follows a standard
+Facebook user and take our survey. The adjustment we make follows a standard
 inverse probability weighting strategy (this being a special case of importance
 sampling).
 

docs/api/covidcast_meta.md

@@ -73,7 +73,7 @@ https://api.covidcast.cmu.edu/epidata/covidcast_meta/
 
 ## Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch Delphi's COVID-19 Surveillance Streams metadata.
 
 ### JavaScript (in a web browser)

docs/api/flusurv.md

@@ -37,7 +37,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [location](../../labels/flusurv_locations.txt) labels |
+| `locations` | locations | `list` of [location](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/flusurv_locations.txt) labels |
 
 ### Optional
 
@@ -105,7 +105,7 @@ https://delphi.cmu.edu/epidata/flusurv/?locations=ca&epiweeks=202001
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch CA FluView Clinical data for epiweeks `201940` and `202001-202010` (11 weeks total).
 
 ### JavaScript (in a web browser)

docs/api/fluview.md

@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 Influenza-like illness (ILI) from U.S. Outpatient Influenza-like Illness Surveillance Network (ILINet).
  - Data source: [United States Centers for Disease Control and Prevention](http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html) (CDC)
  - Temporal Resolution: Weekly* from 1997w40
- - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html), most States and Territories, and some Cities (full list [here](../../src/acquisition/fluview/fluview_locations.py))
+ - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html), most States and Territories, and some Cities (full list [here](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/acquisition/fluview/fluview_locations.py))
  - Open access
 
 \* Data is usually released on Friday
@@ -36,7 +36,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `regions` | regions | `list` of [region](../../labels/regions.txt) labels |
+| `regions` | regions | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt) labels |
 
 ### Optional
 
@@ -120,7 +120,7 @@ https://delphi.cmu.edu/epidata/fluview/?regions=nat&epiweeks=201453&issues=20150
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national FluView data for epiweeks `201440` and `201501-201510` (11 weeks total).