🐛 InjectTool cannot submit data into EBI BioSamples

[bunop]

Describe the bug
BioSample API submission system was changed and InjectTool cannot submit a sample into BioSamples

To Reproduce
Steps to reproduce the behavior:

1. Load new data
2. Validate new data (🐛 InjectTool cannot validate data using OLS #119 need to be solved)
3. Submit data into BioSamples

Expected behavior
Valid data need to be submitted to BioSamples

Errors

  File "/usr/local/lib/python3.6/site-packages/urllib3/connectionpool.py", line 706, in urlopen
    chunked=chunked,
  File "/usr/local/lib/python3.6/site-packages/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/usr/local/lib/python3.6/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/usr/local/lib/python3.6/site-packages/urllib3/connection.py", line 421, in connect
    tls_in_tls=tls_in_tls,
  File "/usr/local/lib/python3.6/site-packages/urllib3/util/ssl_.py", line 450, in ssl_wrap_socket
    sock, context, tls_in_tls, server_hostname=server_hostname
  File "/usr/local/lib/python3.6/site-packages/urllib3/util/ssl_.py", line 493, in _ssl_wrap_socket_impl
    return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
  File "/usr/local/lib/python3.6/ssl.py", line 407, in wrap_socket
    _context=self, _session=session)
  File "/usr/local/lib/python3.6/ssl.py", line 817, in __init__
    self.do_handshake()
  File "/usr/local/lib/python3.6/ssl.py", line 1077, in do_handshake
    self._sslobj.do_handshake()
  File "/usr/local/lib/python3.6/ssl.py", line 689, in do_handshake
    self._sslobj.do_handshake()
ssl.SSLError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:852)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/requests/adapters.py", line 449, in send
    timeout=timeout
  File "/usr/local/lib/python3.6/site-packages/urllib3/connectionpool.py", line 756, in urlopen
    method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
  File "/usr/local/lib/python3.6/site-packages/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='submission-test.ebi.ac.uk', port=443): Max retries exceeded with url: /api/ (Caused by SSLError(SSLError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:852)'),))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/var/uwsgi/image/biosample/tasks/submission.py", line 309, in run
    submission_helper.read_token()
  File "/var/uwsgi/image/biosample/tasks/submission.py", line 141, in read_token
    self.root = pyUSIrest.usi.Root(auth=self.auth)
  File "/usr/local/lib/python3.6/site-packages/pyUSIrest/usi.py", line 46, in __init__
    self.get(self.api_root)
  File "/usr/local/lib/python3.6/site-packages/pyUSIrest/client.py", line 329, in get
    response = super().get(url)
  File "/usr/local/lib/python3.6/site-packages/pyUSIrest/client.py", line 163, in get
    response = self.session.get(url, headers=headers, params=params)
  File "/usr/local/lib/python3.6/site-packages/requests/sessions.py", line 555, in get
    return self.request('GET', url, **kwargs)
  File "/usr/local/lib/python3.6/site-packages/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/usr/local/lib/python3.6/site-packages/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/usr/local/lib/python3.6/site-packages/requests/adapters.py", line 514, in send
    raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='submission-test.ebi.ac.uk', port=443): Max retries exceeded with url: /api/ (Caused by SSLError(SSLError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:852)'),))

Additional context
Submission API endpoint are changed and pyUSIrest, a dependency required to data submission, need to be upgraded. Submission need to be tested using testing and production BioSamples endpoints