Documentation for Blue-NaaS

[appukuttan-shailesh]

Details description of the task

Really good to see BlueNaaS gaining so much more functionality in the last few months. I see that we are having a lot of discussions via emails and Github on how to use these features. It is important for us to document these features so that new users can easily start employing them. E.g. the structure of the experimental "traces" file, how they should be named, the details for the synapses json file, name of URL keyword parameters for initializing parameters etc.

Description of how to test it

See if the documentation (that would be developed / is already available?) helps users make use of the various Blue-NaaS features.

Items updated on BlueNaaS

which might get into the documentation here:

• Temperature is new parameter (needs screenshot update), see Granular Cells in BlueNaaS #330
• Neuron Version might be mentioned (BlueNaaS: update about with NEURON version #397)
• Probably does not need to be mentioned in the documentation: The Neuron error popup (BlueNaaS: should output NERUON log (on failure?) #398)
• Spines/synapses being displayed (BlueNaaS: extra section (spines) and synapses are not visible in the correct location #396)
• Synaptic input? (Having synaptic inputs for bluenaas. #374)
• Handling of attached traces (BlueNaaS: add the ability to change the color and width of the attached voltage traces #393)
• BlueNaaS is callable with a model and the parameters (BlueNaaS: does not load parameters #394)
• Not sure if this is the pace for the doc: The incorporation into the Model Catalog (Integrating BlueNaas with Model catalog #357)

[appukuttan-shailesh]

This ticket can be closed if such documentation already exists, but after a link/button to the documentation is provided on the Blue-NaaS page.

[genric]

Hi @appukuttan-shailesh. If you hit an icon in the upper left corner of BlueNaaS it will bring you to this help page: https://lbologna.github.io/hbp-sp6-guidebook/online_usecases/single_cell_in_silico/single_cell_clamp/single_cell_clamp.html (Which probably needs to be updated with all the recent developments, so we can keep the ticket to do that)

[genric]

Should be fixed by lbologna/hbp-sp6-guidebook#52

[genric]

lbologna/hbp-sp6-guidebook#52 just got merged, so I guess we can close this one.