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When I install it on a Ubuntu server, I came across the error:
In file included from cigraph/src/adjlist.c:27:
cigraph/src/igraph_interrupt_internal.h:42:8: error: unknown type name ‘IGRAPH_THREAD_LOCAL’
and thus: ERROR: compilation failed for package ‘leidenbase’
When I install it on a Ubuntu server, I came across the error:
In file included from cigraph/src/adjlist.c:27:
cigraph/src/igraph_interrupt_internal.h:42:8: error: unknown type name ‘IGRAPH_THREAD_LOCAL’
and thus: ERROR: compilation failed for package ‘leidenbase’
sessionInfo:
version 4.0.4 (2021-02-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.2 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] devtools_2.3.2 usethis_2.0.1 SeuratData_0.2.1 SeuratObject_4.0.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.6 lattice_0.20-41 listenv_0.8.0 prettyunits_1.1.1 ps_1.6.0 assertthat_0.2.1
[7] rprojroot_2.0.2 digest_0.6.27 utf8_1.1.4 parallelly_1.23.0 R6_2.5.0 plyr_1.8.6
[13] ggplot2_3.3.3 pillar_1.5.0 rlang_0.4.10 rstudioapi_0.13 callr_3.5.1 Matrix_1.3-2
[19] desc_1.2.0 stringr_1.4.0 munsell_0.5.0 sctransform_0.3.2 compiler_4.0.4 pkgconfig_2.0.3
[25] pkgbuild_1.2.0 globals_0.14.0 tidyselect_1.1.0 tibble_3.1.0 gridExtra_2.3 codetools_0.2-18
[31] matrixStats_0.58.0 fansi_0.4.2 future_1.21.0 crayon_1.4.1 dplyr_1.0.4 withr_2.4.1
[37] MASS_7.3-53 rappdirs_0.3.3 grid_4.0.4 gtable_0.3.0 lifecycle_1.0.0 magrittr_2.0.1
[43] scales_1.1.1 future.apply_1.7.0 cli_2.3.1 stringi_1.5.3 cachem_1.0.4 reshape2_1.4.4
[49] fs_1.5.0 remotes_2.2.0 testthat_3.0.2 ellipsis_0.3.1 generics_0.1.0 vctrs_0.3.6
[55] tools_4.0.4 glue_1.4.2 purrr_0.3.4 processx_3.4.5 pkgload_1.2.0 parallel_4.0.4
[61] fastmap_1.1.0 colorspace_2.0-0 sessioninfo_1.1.1 memoise_2.0.0
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