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setup.cfg
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[bumpversion]
current_version = 0.2.1
commit = True
tag = True
parse = (?P<major>\d+)
\.(?P<minor>\d+)
\.(?P<patch>\d+)
(?P<release>[a]*)(?P<num>\d*)
serialize =
{major}.{minor}.{patch}{release}{num}
{major}.{minor}.{patch}
tag_name = {new_version}
[metadata]
name = combine_notebooks
url = https://github.com/combine-org/combine-notebooks
download_url = https://pypi.org/project/combine_notebooks
project_urls =
Source Code = https://github.com/combine-org/combine-notebooks
Documentation = https://github.com/combine-org/combine-notebooks
Bug Tracker = https://github.com/combine-org/combine-notebooks/issues
author = Matthias Koenig & Aditya Singhal
author_email = konigmatt@googlemail.com
maintainer = Matthias Koenig
maintainer_email = konigmatt@googlemail.com
classifiers =
Development Status :: 4 - Beta
Intended Audience :: Science/Research
License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
Operating System :: OS Independent
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: Implementation :: CPython
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Bio-Informatics
license = LGPL-3.0
description = combine_notebooks - COMBINE jupyter notebooks in python.
long_description = file: README.rst
long_description_content_type = text/x-rst
keywords =
modeling
standardization
COMBINE
metadata
archive
annotation
[options]
zip_safe = True
python_requires = >=3.8
install_requires =
depinfo>=2.0.0
python-libsbml>=5.19.5
python-libsedml>=2.0.32
pydantic<2.0
sbmlutils>=0.8.1
antimony>=2.13.1
pyneuroml>=0.7.1
libcellml>=0.3.104
libsbgnpy>=0.2.2
pybiopax>=0.1.2
ipython>=8.4.0
nbformat>=5.4.0
nbconvert>=7.3.1
jupyter>=1.0.0
tellurium>=2.2.5.2
copasi-basico>=0.44
numpy>=1.24.3
sbol3>=1.1
sbol-utilities>=1.0a17
parasbolv @ git+https://github.com/BiocomputeLab/paraSBOLv
tests_require =
tox>=3.24.5
pytest>=7.0.1
pytest-cov>=3.0.0
setup_requires =
pytest-runner
packages = find:
package_dir =
= src
include_package_data = True
[options.package_data]
combine_notebooks = py.typed
[aliases]
test = pytest
[options.packages.find]
where = src
[options.extras_require]
development =
pip-tools>6.5.1
black>=22.1.0
bump2version>=1.0.1
isort>=5.10.1
tox>=3.24.3
flake8>=4.0.1
flake8-mypy>=17.8.0
mypy>=0.931
pytest>=7.0.1
pytest-cov>=3.0.0
pre-commit>=3.3.1
nbmake>=1.4.1
[bdist_wheel]
universal = 1
[bumpversion:part:release]
optional_value = placeholder
first_value = placeholder
values =
placeholder
a
[bumpversion:file:setup.py]
search = version="{current_version}"
replace = version="{new_version}"
[bumpversion:file:src/combine_notebooks/__init__.py]
search = __version__ = "{current_version}"
replace = __version__ = "{new_version}"