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how to find p-value in genetic correlation by mixer? #18

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showers14 opened this issue Oct 30, 2023 · 1 comment
Open

how to find p-value in genetic correlation by mixer? #18

showers14 opened this issue Oct 30, 2023 · 1 comment

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@showers14
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hello
i get trait1_vs_trait2.csv estimates from bivariate analysis in mixer
but i did not find the p-value for genetic corrlation (but have rg (mean) rg (std))
could you please tell me how to find p-value in genetic correlation by mixer
@espenhgn
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Hi,
I'm not sure if MiXer reports p-values for rg (only standard errors). Perhaps LDSC is better suited for this? See e.g., https://github.com/comorment/ldsc/blob/main/docs/ldsc_real.md

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@espenhgn @showers14