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Long pauses during training when loading images from big .mrcs #7

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ff98li opened this issue Dec 12, 2022 · 0 comments
Open

Long pauses during training when loading images from big .mrcs #7

ff98li opened this issue Dec 12, 2022 · 0 comments

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@ff98li
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ff98li commented Dec 12, 2022

Hi,

I have been running CryoAI with this dataset EMPIAR-10076. However, for this particular dataset, because it stuffed all images into one big .mrcs file, CryoAI pause significantly long time during training.
Specifically, after every train_num_workers steps, the training gets stuck for about 5-10 minutes and GPU usage drops to 0%. I have compared the training time of EMPIAR-10028, where image chunks are split into multiple .mrcs, and that dataset trained smoothly without pausing.

Is there anyway to fix this?

Thanks!

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