-
Notifications
You must be signed in to change notification settings - Fork 14
/
_pkgdown.yml
executable file
·109 lines (107 loc) · 2.72 KB
/
_pkgdown.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
template:
params:
bootswatch: yeti
reference:
- title: Function Documentation
desc: Man pages for all functions exported by celda
contents:
- '`available_models`'
- '`calc.perplexity`'
- '`calc.perplexity2`'
- '`calculateLoglikFromVariables.celda_C`'
- '`calculateLoglikFromVariables.celda_CG`'
- '`calculateLoglikFromVariables.celda_G`'
- '`calculateLoglikFromVariables`'
- '`calculatePerplexity.celda_C`'
- '`calculatePerplexity.celda_CG`'
- '`calculatePerplexity.celda_G`'
- '`calculatePerplexity`'
- '`calculatePerplexityWithResampling`'
- '`calculateTsne`'
- '`cC.decomposeCounts`'
- '`cCG.decomposeCounts`'
- '`celda`'
- '`celdaGridSearch`'
- '`celdaHeatmap.celda_C`'
- '`celdaHeatmap.celda_CG`'
- '`celdaHeatmap.celda_G`'
- '`celdaHeatmap`'
- '`celdaProbabilityMap.celda_C`'
- '`celdaProbabilityMap.celda_CG`'
- '`celdaProbabilityMap`'
- '`celdaTsne.celda_C`'
- '`celdaTsne.celda_CG`'
- '`celdaTsne.celda_G`'
- '`celdaTsne`'
- '`celda_C`'
- '`celda_CG`'
- '`celda_G`'
- '`cG.decomposeCounts`'
- '`clusterProbability.celda_C`'
- '`clusterProbability.celda_CG`'
- '`clusterProbability.celda_G`'
- '`clusterProbability`'
- '`compareCountMatrix`'
- '`completeLogLikelihood`'
- '`differentialExpression`'
- '`distinct_colors`'
- '`eigenMatMultInt`'
- '`factorizeMatrix.celda_C`'
- '`factorizeMatrix.celda_CG`'
- '`factorizeMatrix.celda_G`'
- '`factorizeMatrix`'
- '`fastNormProp`'
- '`fastNormPropLog`'
- '`fastNormPropSqrt`'
- '`featureModuleLookup.celda_C`'
- '`featureModuleLookup.celda_CG`'
- '`featureModuleLookup.celda_G`'
- '`featureModuleLookup`'
- '`finalLogLikelihood`'
- '`moduleHeatmap`'
- '`normalizeCounts`'
- '`pbmc_res`'
- '`pbmc_select`'
- '`plotDimReduceCluster`'
- '`plotDimReduceGene`'
- '`plotDimReduceGrid`'
- '`plotDimReduceState`'
- '`plotGridSearchPerplexity.celda_C`'
- '`plotGridSearchPerplexity.celda_CG`'
- '`plotGridSearchPerplexity.celda_G`'
- '`plotGridSearchPerplexity`'
- '`plotHeatmap`'
- '`recodeClusterY`'
- '`recodeClusterZ`'
- '`runParams`'
- '`sample.cells`'
- '`selectBestModel`'
- '`semi_pheatmap`'
- '`simulateCells.celda_C`'
- '`simulateCells.celda_CG`'
- '`simulateCells.celda_G`'
- '`simulateCells`'
- '`subsetCeldaList`'
- '`topRank`'
navbar:
structure:
left:
- home
- intro
- reference
- articles
- tutorials
- news
right: github
components:
home:
icon: fa-home fa-lg
href: index.html
reference:
text: Reference
href: reference/index.html
articles:
text: Articles
menu:
- text: Analyzing single-cell RNA-seq count data with Celda
href: articles/celda-analysis.html