Datasets

[xiaosiruwei]

May I ask which file on the corresponding image of SWATH Library, HeLa HF, and DIA HF is used to evaluate the performance of unmodified peptides?

[RobbinBouwmeester]

Hi Xiaosiruwei,

All the translations are available in the figures.ipynb on the zenodo repository.

In this case it is:

rename_dict = {
"mod_fixed_mods" : "HeLa DeepRT",
"unmod_fixed_mods" : "Yeast DeepRT",
"LUNA_HILIC_fixed_mods" : "LUNA HILIC",
"LUNA_SILICA_fixed_mods" : "LUNA SILICA",
"SCX_fixed_mods" : "SCX",
"Xbridge_fixed_mods" : "Xbridge",
"dia_fixed_mods" : "SWATH library",
"PXD005573_mcp" : "DIA HF",
"prosit_ptm_2020" : "ProteomeTools PTM",
"ATLANTIS_SILICA_fixed_mods" : "ATLANTIS SILICA",
"plasma_lumos_1h_psms_aligned" : "Plasma lumos 1h",
"plasma_lumos_2h_psms_aligned" : "Plasma lumos 2h",
"hela_lumos_1h_psms_aligned" : "HeLa Lumos 1h",
"hela_lumos_2h_psms_aligned" : "HeLa Lumos 2h",
"pancreas_psms_aligned" : "Pancreas",
"arabidopsis_psms_aligned" : "Arabidopsis",
"hela_hf_psms_aligned" : "HeLa HF",
"yeast_60min_psms_aligned" : "Yeast 1h",
"yeast_120min_psms_aligned" : "Yeast 2h",
"proteometools_library" : "ProteomeTools",
}

Hope that helps!

Kind regards,

Robbin