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installation of rasterio via conda-forge triggers a dysfunction of rioxarray.open_rasterio(file) #292

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PerrineFreydier opened this issue Jan 11, 2024 · 5 comments
Open
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installation of rasterio via conda-forge triggers a dysfunction of rioxarray.open_rasterio(file) #292

PerrineFreydier opened this issue Jan 11, 2024 · 5 comments
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@PerrineFreydier
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Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

This function

myfile=whatever.nc
mydata = rioxarray.open_rasterio(myfile)

doesn't work in my environnement that I created with the command conda install conda-forge::rasterio

But, if specify in the command, rasterio=1.3.9=py311hd1b6236_0, then, the rioxarray.open_rasterio function works.

So, it seems that the problem comes from the specific version of rasterio that is automatically generated by the conda-forge channel. It takes the py311h02f6225_2 instead of the py311hd1b6236_0

My configuration with the environnment that doesn't work :
rioxarray 0.15.0 pyhd8ed1ab_0 conda-forge
rasterio 1.3.9 py311h02f6225_2 conda-forge
gdal 3.8.2 py311hff9a05f_1 conda-forge
python 3 11 5
Windows-10-10.0.19045-SP0

Installation method :
I both tried in a command line
conda create -n myenv python=3.11 numpy jupyter geopandas shapely pyrosm stonesoup gpxpy pandas xarray rasterio rasterstats rioxarray hvplot plotly geoviews osmnx pyarrow folium seaborn xlsxwriter geojson python-kaleido
or with a yml file :

name: myenv
channels:

conda-forge
defaults
dependencies:
python=3.11.5
numpy
jupyter
geopandas
shapely
pyrosm
stonesoup
gpxpy
pandas
xarray
rasterio
rasterstats
rioxarray
hvplot
plotly
geoviews
osmnx
pyarrow
folium
seaborn
xlsxwriter
geojson
python-kaleido

Installed packages

Environment (conda list):
Détails
$ conda list | grep -E "rasterio|xarray|gdal"

# Name                    Version                   Build  Channel
affine                    2.4.0              pyhd8ed1ab_0    conda-forge
anyio                     4.2.0              pyhd8ed1ab_0    conda-forge
argon2-cffi               23.1.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py311ha68e1ae_4    conda-forge
arrow                     1.3.0              pyhd8ed1ab_0    conda-forge
asttokens                 2.4.1              pyhd8ed1ab_0    conda-forge
async-lru                 2.0.4              pyhd8ed1ab_0    conda-forge
attrs                     23.2.0             pyh71513ae_0    conda-forge
aws-c-auth                0.7.11               h9ca94be_0    conda-forge
aws-c-cal                 0.6.9                h7f0e5be_2    conda-forge
aws-c-common              0.9.10               hcfcfb64_0    conda-forge
aws-c-compression         0.2.17               h7f0e5be_7    conda-forge
aws-c-event-stream        0.4.1                h51e6447_1    conda-forge
aws-c-http                0.8.0                h80119a0_1    conda-forge
aws-c-io                  0.13.36              ha737126_3    conda-forge
aws-c-mqtt                0.10.0               h2889a98_2    conda-forge
aws-c-s3                  0.4.7                h876bada_3    conda-forge
aws-c-sdkutils            0.1.13               h7f0e5be_0    conda-forge
aws-checksums             0.1.17               h7f0e5be_6    conda-forge
aws-crt-cpp               0.26.0               h42107db_5    conda-forge
aws-sdk-cpp               1.11.210             h752ccfa_9    conda-forge
azure-core-cpp            1.10.3               h249a519_0    conda-forge
azure-storage-blobs-cpp   12.10.0              h91493d7_0    conda-forge
azure-storage-common-cpp  12.5.0               h91493d7_2    conda-forge
babel                     2.14.0             pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
bleach                    6.1.0              pyhd8ed1ab_0    conda-forge
blosc                     1.21.5               hdccc3a2_0    conda-forge
bokeh                     3.3.2              pyhd8ed1ab_0    conda-forge
branca                    0.7.0              pyhd8ed1ab_1    conda-forge
brotli                    1.1.0                hcfcfb64_1    conda-forge
brotli-bin                1.1.0                hcfcfb64_1    conda-forge
brotli-python             1.1.0           py311h12c1d0e_1    conda-forge
bzip2                     1.0.8                hcfcfb64_5    conda-forge
c-ares                    1.24.0               hcfcfb64_0    conda-forge
ca-certificates           2023.11.17           h56e8100_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.18.0               h1fef639_0    conda-forge
cartopy                   0.22.0          py311hf63dbb6_1    conda-forge
certifi                   2023.11.17         pyhd8ed1ab_0    conda-forge
cffi                      1.16.0          py311ha68e1ae_0    conda-forge
cfitsio                   4.3.1                h9b0cee5_0    conda-forge
cftime                    1.6.3           py311h59ca53f_0    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
click                     8.1.7           win_pyh7428d3b_0    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.7.2              pyhd8ed1ab_1    conda-forge
cloudpickle               3.0.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
colorcet                  3.0.1              pyhd8ed1ab_0    conda-forge
comm                      0.2.1              pyhd8ed1ab_0    conda-forge
contourpy                 1.2.0           py311h005e61a_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
cykhash                   2.0.1           py311h12c1d0e_2    conda-forge
cython                    3.0.7           py311h12c1d0e_0    conda-forge
dask-core                 2023.12.1          pyhd8ed1ab_0    conda-forge
datashader                0.16.0             pyhd8ed1ab_0    conda-forge
debugpy                   1.8.0           py311h12c1d0e_1    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.2.0              pyhd8ed1ab_0    conda-forge
executing                 2.0.1              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                h63175ca_1    conda-forge
fiona                     1.9.5           py311hbcf8545_3    conda-forge
folium                    0.15.1             pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_1    conda-forge
fontconfig                2.14.2               hbde0cde_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.47.0          py311ha68e1ae_0    conda-forge
fqdn                      1.5.1              pyhd8ed1ab_0    conda-forge
freetype                  2.12.1               hdaf720e_2    conda-forge
freexl                    2.0.0                h8276f4a_0    conda-forge
fsspec                    2023.12.2          pyhca7485f_0    conda-forge
gdal                      3.8.2           py311hff9a05f_1    conda-forge
geojson                   3.1.0              pyhd8ed1ab_0    conda-forge
geopandas                 0.14.2             pyhd8ed1ab_0    conda-forge
geopandas-base            0.14.2             pyha770c72_0    conda-forge
geos                      3.12.1               h1537add_0    conda-forge
geotiff                   1.7.1               hbf5ca3a_15    conda-forge
geoviews                  1.11.0             pyhd8ed1ab_0    conda-forge
geoviews-core             1.11.0             pyha770c72_0    conda-forge
gettext                   0.21.1               h5728263_0    conda-forge
gpxpy                     1.6.2              pyhd8ed1ab_0    conda-forge
hdf4                      4.2.15               h5557f11_7    conda-forge
hdf5                      1.14.3          nompi_h73e8ff5_100    conda-forge
holoviews                 1.18.1             pyhd8ed1ab_0    conda-forge
hvplot                    0.9.1              pyhd8ed1ab_0    conda-forge
icu                       73.2                 h63175ca_0    conda-forge
idna                      3.6                pyhd8ed1ab_0    conda-forge
importlib-metadata        7.0.1              pyha770c72_0    conda-forge
importlib_metadata        7.0.1                hd8ed1ab_0    conda-forge
importlib_resources       6.1.1              pyhd8ed1ab_0    conda-forge
intel-openmp              2023.2.0         h57928b3_50497    conda-forge
ipykernel                 6.28.0             pyha63f2e9_0    conda-forge
ipython                   8.20.0             pyh7428d3b_0    conda-forge
ipywidgets                8.1.1              pyhd8ed1ab_0    conda-forge
isoduration               20.11.0            pyhd8ed1ab_0    conda-forge
jedi                      0.19.1             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
joblib                    1.3.2              pyhd8ed1ab_0    conda-forge
json5                     0.9.14             pyhd8ed1ab_0    conda-forge
jsonpointer               2.4             py311h1ea47a8_3    conda-forge
jsonschema                4.20.0             pyhd8ed1ab_0    conda-forge
jsonschema-specifications 2023.12.1          pyhd8ed1ab_0    conda-forge
jsonschema-with-format-nongpl 4.20.0             pyhd8ed1ab_0    conda-forge
jupyter                   1.0.0             pyhd8ed1ab_10    conda-forge
jupyter-lsp               2.2.1              pyhd8ed1ab_0    conda-forge
jupyter_client            8.6.0              pyhd8ed1ab_0    conda-forge
jupyter_console           6.6.3              pyhd8ed1ab_0    conda-forge
jupyter_core              5.7.1           py311h1ea47a8_0    conda-forge
jupyter_events            0.9.0              pyhd8ed1ab_0    conda-forge
jupyter_server            2.12.2             pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.5.1              pyhd8ed1ab_0    conda-forge
jupyterlab                4.0.10             pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.3.0              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.25.2             pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.9              pyhd8ed1ab_0    conda-forge
kaleido-core              0.2.1                h8ffe710_0    conda-forge
kealib                    1.5.3                hd248416_0    conda-forge
kiwisolver                1.4.5           py311h005e61a_1    conda-forge
krb5                      1.21.2               heb0366b_0    conda-forge
lcms2                     2.16                 h67d730c_0    conda-forge
lerc                      4.0.0                h63175ca_0    conda-forge
libabseil                 20230802.1      cxx17_h63175ca_0    conda-forge
libaec                    1.1.2                h63175ca_1    conda-forge
libarchive                3.7.2                h313118b_1    conda-forge
libarrow                  14.0.2           he5f67d5_2_cpu    conda-forge
libarrow-acero            14.0.2           h63175ca_2_cpu    conda-forge
libarrow-dataset          14.0.2           h63175ca_2_cpu    conda-forge
libarrow-flight           14.0.2           h53b1db0_2_cpu    conda-forge
libarrow-flight-sql       14.0.2           h78eab7c_2_cpu    conda-forge
libarrow-gandiva          14.0.2           hb2eaab1_2_cpu    conda-forge
libarrow-substrait        14.0.2           hd4c9904_2_cpu    conda-forge
libblas                   3.9.0              20_win64_mkl    conda-forge
libboost-headers          1.84.0               h57928b3_0    conda-forge
libbrotlicommon           1.1.0                hcfcfb64_1    conda-forge
libbrotlidec              1.1.0                hcfcfb64_1    conda-forge
libbrotlienc              1.1.0                hcfcfb64_1    conda-forge
libcblas                  3.9.0              20_win64_mkl    conda-forge
libcrc32c                 1.1.2                h0e60522_0    conda-forge
libcurl                   8.5.0                hd5e4a3a_0    conda-forge
libdeflate                1.19                 hcfcfb64_0    conda-forge
libevent                  2.1.12               h3671451_1    conda-forge
libexpat                  2.5.0                h63175ca_1    conda-forge
libffi                    3.4.2                h8ffe710_5    conda-forge
libgdal                   3.8.2                h576f4c1_1    conda-forge
libglib                   2.78.3               h16e383f_0    conda-forge
libgoogle-cloud           2.12.0               h39f2fc6_4    conda-forge
libgrpc                   1.59.3               h5bbd4a7_0    conda-forge
libiconv                  1.17                 hcfcfb64_2    conda-forge
libjpeg-turbo             3.0.0                hcfcfb64_1    conda-forge
libkml                    1.3.0             haf3e7a6_1018    conda-forge
liblapack                 3.9.0              20_win64_mkl    conda-forge
libnetcdf                 4.9.2           nompi_h07c049d_113    conda-forge
libparquet                14.0.2           h7ec3a38_2_cpu    conda-forge
libpng                    1.6.39               h19919ed_0    conda-forge
libpq                     16.1                 hdb24f17_7    conda-forge
libprotobuf               4.24.4               hb8276f3_0    conda-forge
libre2-11                 2023.06.02           h8c5ae5e_0    conda-forge
librttopo                 1.1.0               h94c4f80_15    conda-forge
libsodium                 1.0.18               h8d14728_1    conda-forge
libspatialindex           1.9.3                h39d44d4_4    conda-forge
libspatialite             5.1.0                hf2f0abc_4    conda-forge
libsqlite                 3.44.2               hcfcfb64_0    conda-forge
libssh2                   1.11.0               h7dfc565_0    conda-forge
libthrift                 0.19.0               ha2b3283_1    conda-forge
libtiff                   4.6.0                h6e2ebb7_2    conda-forge
libutf8proc               2.8.0                h82a8f57_0    conda-forge
libwebp-base              1.3.2                hcfcfb64_0    conda-forge
libxcb                    1.15                 hcd874cb_0    conda-forge
libxml2                   2.12.3               hc3477c8_0    conda-forge
libzip                    1.10.1               h1d365fa_3    conda-forge
libzlib                   1.2.13               hcfcfb64_5    conda-forge
linkify-it-py             2.0.2              pyhd8ed1ab_0    conda-forge
llvmlite                  0.41.1          py311h5bc0dda_0    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
lz4-c                     1.9.4                hcfcfb64_0    conda-forge
lzo                       2.10              he774522_1000    conda-forge
m2w64-gcc-libgfortran     5.3.0                         6    conda-forge
m2w64-gcc-libs            5.3.0                         7    conda-forge
m2w64-gcc-libs-core       5.3.0                         7    conda-forge
m2w64-gmp                 6.1.0                         2    conda-forge
m2w64-libwinpthread-git   5.0.0.4634.697f757               2    conda-forge
mapclassify               2.6.1              pyhd8ed1ab_0    conda-forge
markdown                  3.5.1              pyhd8ed1ab_0    conda-forge
markdown-it-py            3.0.0              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.3           py311ha68e1ae_1    conda-forge
mathjax                   2.7.7                h57928b3_3    conda-forge
matplotlib-base           3.8.2           py311h6e989c2_0    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mdit-py-plugins           0.4.0              pyhd8ed1ab_0    conda-forge
mdurl                     0.1.2              pyhd8ed1ab_0    conda-forge
minizip                   4.0.4                h5bed578_0    conda-forge
mistune                   3.0.2              pyhd8ed1ab_0    conda-forge
mkl                       2023.2.0         h6a75c08_50497    conda-forge
msys2-conda-epoch         20160418                      1    conda-forge
multipledispatch          0.6.0                      py_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
nbclient                  0.8.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.14.0             pyhd8ed1ab_0    conda-forge
nbconvert-core            7.14.0             pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.14.0             pyhd8ed1ab_0    conda-forge
nbformat                  5.9.2              pyhd8ed1ab_0    conda-forge
nest-asyncio              1.5.8              pyhd8ed1ab_0    conda-forge
netcdf4                   1.6.5           nompi_py311he019f65_100    conda-forge
networkx                  3.2.1              pyhd8ed1ab_0    conda-forge
notebook                  7.0.6              pyhd8ed1ab_0    conda-forge
notebook-shim             0.2.3              pyhd8ed1ab_0    conda-forge
numba                     0.58.1          py311h2c0921f_0    conda-forge
numpy                     1.26.3          py311h0b4df5a_0    conda-forge
openjpeg                  2.5.0                h3d672ee_3    conda-forge
openssl                   3.2.0                hcfcfb64_1    conda-forge
orc                       1.9.2                hf0b6bd4_0    conda-forge
ordered-set               4.1.0              pyhd8ed1ab_0    conda-forge
osmnx                     1.8.1              pyhd8ed1ab_0    conda-forge
overrides                 7.4.0              pyhd8ed1ab_0    conda-forge
packaging                 23.2               pyhd8ed1ab_0    conda-forge
pandas                    2.1.4           py311hf63dbb6_0    conda-forge
pandoc                    3.1.3                h57928b3_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
panel                     1.3.6              pyhd8ed1ab_0    conda-forge
param                     2.0.1              pyhca7485f_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
partd                     1.4.1              pyhd8ed1ab_0    conda-forge
patsy                     0.5.6              pyhd8ed1ab_0    conda-forge
pcre2                     10.42                h17e33f8_0    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    10.2.0          py311h4dd8a23_0    conda-forge
pip                       23.3.2             pyhd8ed1ab_0    conda-forge
pixman                    0.43.0               h63175ca_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
platformdirs              4.1.0              pyhd8ed1ab_0    conda-forge
plotly                    5.18.0             pyhd8ed1ab_0    conda-forge
poppler                   23.12.0              hc2f3c52_0    conda-forge
poppler-data              0.4.12               hd8ed1ab_0    conda-forge
postgresql                16.1                 h1beaf6b_7    conda-forge
proj                      9.3.1                he13c7e8_0    conda-forge
prometheus_client         0.19.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.42             pyha770c72_0    conda-forge
prompt_toolkit            3.0.42               hd8ed1ab_0    conda-forge
psutil                    5.9.7           py311ha68e1ae_0    conda-forge
pthread-stubs             0.4               hcd874cb_1001    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pyarrow                   14.0.2          py311h6a6099b_2_cpu    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pyct                      0.5.0              pyhd8ed1ab_0    conda-forge
pygments                  2.17.2             pyhd8ed1ab_0    conda-forge
pymap3d                   3.0.1              pyhd8ed1ab_1    conda-forge
pyparsing                 3.1.1              pyhd8ed1ab_0    conda-forge
pyproj                    3.6.1           py311h82130bc_5    conda-forge
pyrobuf                   0.9.3           py311h12c1d0e_6    conda-forge
pyrosm                    0.6.2           py311h12c1d0e_1    conda-forge
pyshp                     2.3.1              pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyh0701188_6    conda-forge
python                    3.11.5          h2628c8c_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.19.1             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python-kaleido            0.2.1              pyhd8ed1ab_0    conda-forge
python-rapidjson          1.14            py311h12c1d0e_0    conda-forge
python-tzdata             2023.4             pyhd8ed1ab_0    conda-forge
python_abi                3.11                    4_cp311    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pyviz_comms               3.0.0              pyhd8ed1ab_0    conda-forge
pywin32                   306             py311h12c1d0e_2    conda-forge
pywinpty                  2.0.12          py311h12c1d0e_0    conda-forge
pyyaml                    6.0.1           py311ha68e1ae_1    conda-forge
pyzmq                     25.1.2          py311h9250fbb_0    conda-forge
qtconsole-base            5.5.1              pyha770c72_0    conda-forge
qtpy                      2.4.1              pyhd8ed1ab_0    conda-forge
rasterio                  1.3.9           py311h02f6225_2    conda-forge
rasterstats               0.19.0             pyhd8ed1ab_0    conda-forge
re2                       2023.06.02           hcbb65ff_0    conda-forge
referencing               0.32.1             pyhd8ed1ab_0    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
rioxarray                 0.15.0             pyhd8ed1ab_0    conda-forge
rpds-py                   0.16.2          py311hc37eb10_0    conda-forge
rtree                     1.1.0           py311hcacb13a_0    conda-forge
ruamel.yaml               0.18.5          py311ha68e1ae_0    conda-forge
ruamel.yaml.clib          0.2.7           py311ha68e1ae_2    conda-forge
scikit-learn              1.3.2           py311h142b183_2    conda-forge
scipy                     1.11.4          py311h0b4df5a_0    conda-forge
seaborn                   0.13.1               hd8ed1ab_0    conda-forge
seaborn-base              0.13.1             pyhd8ed1ab_0    conda-forge
send2trash                1.8.2              pyh08f2357_0    conda-forge
setuptools                69.0.3             pyhd8ed1ab_0    conda-forge
shapely                   2.0.2           py311h16bee0b_1    conda-forge
simplejson                3.19.2          py311ha68e1ae_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.10               hfb803bf_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
snuggs                    1.4.7                      py_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
sqlite                    3.44.2               hcfcfb64_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
statsmodels               0.14.1          py311h59ca53f_0    conda-forge
stonesoup                 1.1                pyhd8ed1ab_0    conda-forge
tbb                       2021.7.0             h91493d7_0    conda-forge
tenacity                  8.2.3              pyhd8ed1ab_0    conda-forge
terminado                 0.18.0             pyh5737063_0    conda-forge
threadpoolctl             3.2.0              pyha21a80b_0    conda-forge
tiledb                    2.19.0               h8e52ccb_0    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.13               h5226925_1    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tornado                   6.3.3           py311ha68e1ae_1    conda-forge
tqdm                      4.66.1             pyhd8ed1ab_0    conda-forge
traitlets                 5.14.1             pyhd8ed1ab_0    conda-forge
types-python-dateutil     2.8.19.20240106    pyhd8ed1ab_0    conda-forge
typing-extensions         4.9.0                hd8ed1ab_0    conda-forge
typing_extensions         4.9.0              pyha770c72_0    conda-forge
typing_utils              0.1.0              pyhd8ed1ab_0    conda-forge
tzdata                    2023d                h0c530f3_0    conda-forge
uc-micro-py               1.0.2              pyhd8ed1ab_0    conda-forge
ucrt                      10.0.22621.0         h57928b3_0    conda-forge
uri-template              1.3.0              pyhd8ed1ab_0    conda-forge
uriparser                 0.9.7                h1537add_1    conda-forge
urllib3                   2.1.0              pyhd8ed1ab_0    conda-forge
utm                       0.7.0              pyhd8ed1ab_0    conda-forge
vc                        14.3                hcf57466_18    conda-forge
vc14_runtime              14.38.33130         h82b7239_18    conda-forge
vs2015_runtime            14.38.33130         hcb4865c_18    conda-forge
wcwidth                   0.2.12             pyhd8ed1ab_0    conda-forge
webcolors                 1.13               pyhd8ed1ab_0    conda-forge
webencodings              0.5.1              pyhd8ed1ab_2    conda-forge
websocket-client          1.7.0              pyhd8ed1ab_0    conda-forge
wheel                     0.42.0             pyhd8ed1ab_0    conda-forge
widgetsnbextension        4.0.9              pyhd8ed1ab_0    conda-forge
win_inet_pton             1.1.0              pyhd8ed1ab_6    conda-forge
winpty                    0.4.3                         4    conda-forge
xarray                    2023.12.0          pyhd8ed1ab_0    conda-forge
xerces-c                  3.2.5                h63175ca_0    conda-forge
xlsxwriter                3.1.9              pyhd8ed1ab_0    conda-forge
xorg-libxau               1.0.11               hcd874cb_0    conda-forge
xorg-libxdmcp             1.1.3                hcd874cb_0    conda-forge
xyzservices               2023.10.1          pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h8d14728_0    conda-forge
yaml                      0.2.5                h8ffe710_2    conda-forge
zeromq                    4.3.5                h63175ca_0    conda-forge
zipp                      3.17.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hcfcfb64_5    conda-forge
zstd                      1.5.5                h12be248_0    conda-forge

Environment info

active environment : conda_scientifique_05janv2024V2
    active env location : C:\Users\freydier\AppData\Local\anaconda3\envs\conda_scientifique_05janv2024V2
            shell level : 2
       user config file : C:\Users\freydier\.condarc
 populated config files : C:\Users\freydier\.condarc
          conda version : 23.7.4
    conda-build version : 3.26.1
         python version : 3.11.5.final.0
       virtual packages : __archspec=1=x86_64
                          __win=0=0
       base environment : C:\Users\freydier\AppData\Local\anaconda3  (writable)
      conda av data dir : C:\Users\freydier\AppData\Local\anaconda3\etc\conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/win-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/win-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/win-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://repo.anaconda.com/pkgs/msys2/win-64
                          https://repo.anaconda.com/pkgs/msys2/noarch
          package cache : C:\Users\freydier\AppData\Local\anaconda3\pkgs
                          C:\Users\freydier\.conda\pkgs
                          C:\Users\freydier\AppData\Local\conda\conda\pkgs
       envs directories : C:\Users\freydier\AppData\Local\anaconda3\envs
                          C:\Users\freydier\.conda\envs
                          C:\Users\freydier\AppData\Local\conda\conda\envs
               platform : win-64
             user-agent : conda/23.7.4 requests/2.31.0 CPython/3.11.5 Windows/10 Windows/10.0.19045 aau/0.4.2 c/AeI4sKam-5wynCYyQPBc8A s/voOJKVqBAbQ_PIsah9v-GA e/GsNIfHYVg1abCWiHvRdLUQ
          administrator : False
             netrc file : None
           offline mode : False
@weiji14
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weiji14 commented Jan 11, 2024 •
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Could you post the error message you've been getting? That build _2 was generated from a libgdal 3.8 rebuild at #289. I'm wondering if there are some other dependencies (e.g. hdf5) you'll need to upgrade/reinstall to be compatible with libgdal3.8 too.

@PerrineFreydier
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I have this error message
image

@weiji14
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weiji14 commented Jan 11, 2024 •
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Hmm ok, I found that KeyError: 'NETCDF_DIM_time_VALUES' mentioned at corteva/rioxarray#174 (comment) and mdsumner/ghrsst.coop#3 (comment), but not sure if those are related. Could you copy and paste the output of rioxarray.show_versions() (as text rather than a screenshot)? It might be that you have some incompatible netcdf4 version and need to upgrade.

Also, just checking if you are opening the NetCDF from a remote HTTP url? Also, what is the structure inside your NetCDF file (e.g. number of dimensions).

@PerrineFreydier
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Ok, so

rioxarray.show_versions()
rioxarray` (0.15.0) deps:
rasterio: 1.3.9
xarray: 2023.12.0
GDAL: 3.8.2
GEOS: 3.12.1
PROJ: 9.3.1
PROJ DATA: C:\Users\freydier\AppData\Local/proj;C:\Users\freydier\AppData\Local\anaconda3\envs\conda_scientifique_05janv2024V2\Library/share/proj;D:/bld/proj_1701484245271/_h_env/Library/share/proj
GDAL DATA: C:\Users\freydier\AppData\Local\anaconda3\envs\conda_scientifique_05janv2024V2\Library\share\gdal

Other python deps:
scipy: 1.11.4
pyproj: 3.6.1
rioxarray.show_versions()
System:
python: 3.11.5 | packaged by conda-forge | (main, Aug 27 2023, 03:23:48) [MSC v.1936 64 bit (AMD64)]
executable: C:\Users\freydier\AppData\Local\anaconda3\envs\conda_scientifique_05janv2024V2\python.exe
machine: Windows-10-10.0.19045-SP0

I downloaded my file from https://www.gloh2o.org/mswep/ , then I open it from my hard drive
My netcdf file is organizing as following :

file='198101.nc' test = Dataset(file, 'r') print(test.variables.keys())
dict_keys(['lon', 'lat', 'time', 'precipitation'])

test["time"]
<class 'netCDF4._netCDF4.Variable'>
int32 time(time)
units: days since 1900-1-1 00:00:00
long_name: time
unlimited dimensions: time
current shape = (1,)
filling on, default _FillValue of -2147483647 used

@snowman2 snowman2 mentioned this issue Jun 21, 2024
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@akrherz
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akrherz commented Dec 2, 2024

@PerrineFreydier is this issue still valid for you?

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@akrherz @weiji14 @PerrineFreydier