oci native image is missing /usr/bin/ld

[akdev1l]

Host system details

Provide the output of rpm-ostree status.

$ rpm-ostree status
State: idle
Deployments:
● ostree-unverified-registry:ghcr.io/akdev1l/ostree-images/fedora-nvsb:latest
                   Digest: sha256:aec51c811f4329e6b642db2cf7365630ac11b5cbca7d6c6c5163eb8b92cd4c69
                  Version: 37.20221203.0 (2022-12-09T03:44:46Z)

  ostree-unverified-registry:ghcr.io/akdev1l/ostree-images/fedora-nvsb:latest
                   Digest: sha256:ab8f5d84395c2660f13b52ab76a80ab4309a1a97cf79022250a85db7cf829e9d
                  Version: 37.20221203.0 (2022-12-09T01:57:44Z)

Expected vs actual behavior

When I create a custom derived image and I install binutils I see that /usr/bin/ld is missing.

the expected behaviour is that installing binutils provides /usr/bin/ld.

the actual behaviour is that even with that package installed this specific file is not there.

$ podman run --rm -it --entrypoint /bin/bash test:latest
bash-5.2# rpm -qf /usr/bin/ld
binutils-2.38-25.fc37.x86_64
bash-5.2# /usr/bin/ld
bash: /usr/bin/ld: No such file or directory

Steps to reproduce it

Provide any additional data that may help debug this - which specific version of
an RPM is in the repo, or any host system configuration.

I checked my fedora system and I saw that this file is actually a symlink that goes /usr/bin/ld -> /etc/alternatives/ld -> /usr/bin/ld.bfd

This is minimal verifiable example in script form:

1. build the container image

$ cat Container <<EOF >Containerfile
FROM ghcr.io/cgwalters/fedora-silverblue:37

RUN rpm-ostree install binutils && \
    ostree container commit 
EOF

podman build --format oci -t test:latest .

2. run it with podman run --rm -it --entrypoint /bin/bash test:latest
3. verify that binutils is installed but /usr/bin/ld is missing: rpm -qf /usr/bin/ld && /usr/bin/ld

podman info in case that matters:

host:
  arch: amd64
  buildahVersion: 1.28.0
  cgroupControllers:
  - cpu
  - io
  - memory
  - pids
  cgroupManager: systemd
  cgroupVersion: v2
  conmon:
    package: conmon-2.1.5-1.fc37.x86_64
    path: /usr/bin/conmon
    version: 'conmon version 2.1.5, commit: '
  cpuUtilization:
    idlePercent: 98.82
    systemPercent: 0.25
    userPercent: 0.92
  cpus: 16
  distribution:
    distribution: fedora
    variant: workstation
    version: "37"
  eventLogger: journald
  hostname: toronto.hq.akdev.xyz
  idMappings:
    gidmap:
    - container_id: 0
      host_id: 1000
      size: 1
    - container_id: 1
      host_id: 100000
      size: 65536
    uidmap:
    - container_id: 0
      host_id: 1000
      size: 1
    - container_id: 1
      host_id: 100000
      size: 65536
  kernel: 6.0.10-300.fc37.x86_64
  linkmode: dynamic
  logDriver: journald
  memFree: 12185288704
  memTotal: 67342004224
  networkBackend: netavark
  ociRuntime:
    name: crun
    package: crun-1.7-1.fc37.x86_64
    path: /usr/bin/crun
    version: |-
      crun version 1.7
      commit: 40d996ea8a827981895ce22886a9bac367f87264
      rundir: /run/user/1000/crun
      spec: 1.0.0
      +SYSTEMD +SELINUX +APPARMOR +CAP +SECCOMP +EBPF +CRIU +LIBKRUN +WASM:wasmedge +YAJL
  os: linux
  remoteSocket:
    exists: true
    path: /run/user/1000/podman/podman.sock
  security:
    apparmorEnabled: false
    capabilities: CAP_CHOWN,CAP_DAC_OVERRIDE,CAP_FOWNER,CAP_FSETID,CAP_KILL,CAP_NET_BIND_SERVICE,CAP_SETFCAP,CAP_SETGID,CAP_SETPCAP,CAP_SETUID,CAP_SYS_CHROOT
    rootless: true
    seccompEnabled: true
    seccompProfilePath: /usr/share/containers/seccomp.json
    selinuxEnabled: true
  serviceIsRemote: false
  slirp4netns:
    executable: /usr/bin/slirp4netns
    package: slirp4netns-1.2.0-8.fc37.x86_64
    version: |-
      slirp4netns version 1.2.0
      commit: 656041d45cfca7a4176f6b7eed9e4fe6c11e8383
      libslirp: 4.7.0
      SLIRP_CONFIG_VERSION_MAX: 4
      libseccomp: 2.5.3
  swapFree: 8585211904
  swapTotal: 8589930496
  uptime: 40h 39m 28.00s (Approximately 1.67 days)
plugins:
  authorization: null
  log:
  - k8s-file
  - none
  - passthrough
  - journald
  network:
  - bridge
  - macvlan
  volume:
  - local
registries:
  search:
  - registry.fedoraproject.org
  - registry.access.redhat.com
  - docker.io
  - quay.io
store:
  configFile: /home/akdev/.config/containers/storage.conf
  containerStore:
    number: 13
    paused: 0
    running: 1
    stopped: 12
  graphDriverName: overlay
  graphOptions: {}
  graphRoot: /home/akdev/.local/share/containers/storage
  graphRootAllocated: 1978662912000
  graphRootUsed: 1251037745152
  graphStatus:
    Backing Filesystem: btrfs
    Native Overlay Diff: "true"
    Supports d_type: "true"
    Using metacopy: "false"
  imageCopyTmpDir: /var/tmp
  imageStore:
    number: 20
  runRoot: /run/user/1000/containers
  volumePath: /home/akdev/.local/share/containers/storage/volumes
version:
  APIVersion: 4.3.1
  Built: 1668178887
  BuiltTime: Fri Nov 11 10:01:27 2022
  GitCommit: ""
  GoVersion: go1.19.2
  Os: linux
  OsArch: linux/amd64
  Version: 4.3.1

Would you like to work on the issue?

I am totally open to contribute but I am not at all familiar with this project :-(. I know a little rust.

[cgwalters]

Yeah, this is #1614

[cgwalters]

Marking as dup of #1614