Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

JN.1.4 + S:N185D ( 293 sequences, 8 countries) #2462

Closed
FedeGueli opened this issue Jan 17, 2024 · 4 comments
Closed

JN.1.4 + S:N185D ( 293 sequences, 8 countries) #2462

FedeGueli opened this issue Jan 17, 2024 · 4 comments
Milestone

Comments

@FedeGueli
Copy link
Contributor

Transferred from: sars-cov-2-variants/lineage-proposals#1180

Defining mutations:
JN.1.4 [Orf1a:T170I (C774T)] > T18453C > S:N185D (A22115G)

Query:C774T,T18453C,A22115G
Tree:
Screenshot 2024-01-17 alle 13 10 04
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_9e38_7c3610.json?label=id:node_6862179
Countries:
Screenshot 2024-01-17 alle 13 10 35
Samples: 118
First sample collected on 2023-11-17 EPI_ISL_18601499 NY
IDs:

Here EPI_ISL_18601499, EPI_ISL_18621722, EPI_ISL_18621757, EPI_ISL_18621810, EPI_ISL_18621904, EPI_ISL_18621928, EPI_ISL_18636446, EPI_ISL_18636476, EPI_ISL_18636501, EPI_ISL_18644755, EPI_ISL_18644779, EPI_ISL_18691048, EPI_ISL_18691137, EPI_ISL_18691301, EPI_ISL_18691545, EPI_ISL_18691870, EPI_ISL_18691903, EPI_ISL_18691931, EPI_ISL_18692251, EPI_ISL_18692305, EPI_ISL_18695464, EPI_ISL_18695471, EPI_ISL_18704446, EPI_ISL_18704455, EPI_ISL_18713067, EPI_ISL_18714063, EPI_ISL_18721012, EPI_ISL_18724910, EPI_ISL_18728290, EPI_ISL_18728325, EPI_ISL_18728449, EPI_ISL_18728496, EPI_ISL_18728527, EPI_ISL_18728652, EPI_ISL_18728657, EPI_ISL_18728668, EPI_ISL_18728670, EPI_ISL_18728694, EPI_ISL_18728759, EPI_ISL_18728972, EPI_ISL_18729007, EPI_ISL_18729017, EPI_ISL_18729037, EPI_ISL_18729054, EPI_ISL_18729134, EPI_ISL_18729192, EPI_ISL_18729205, EPI_ISL_18729208, EPI_ISL_18729217, EPI_ISL_18729239, EPI_ISL_18729302, EPI_ISL_18730675, EPI_ISL_18730696-18730697, EPI_ISL_18730700, EPI_ISL_18730704, EPI_ISL_18730707, EPI_ISL_18730730, EPI_ISL_18730733, EPI_ISL_18730737, EPI_ISL_18741991, EPI_ISL_18751814, EPI_ISL_18756465, EPI_ISL_18756723, EPI_ISL_18756898, EPI_ISL_18756989, EPI_ISL_18757115, EPI_ISL_18757125, EPI_ISL_18757139, EPI_ISL_18757166, EPI_ISL_18757171, EPI_ISL_18757222, EPI_ISL_18757358, EPI_ISL_18757369, EPI_ISL_18757389, EPI_ISL_18757394, EPI_ISL_18757553, EPI_ISL_18769099, EPI_ISL_18772763, EPI_ISL_18772813, EPI_ISL_18772843, EPI_ISL_18773880, EPI_ISL_18778005, EPI_ISL_18779060, EPI_ISL_18779063, EPI_ISL_18779074, EPI_ISL_18779080, EPI_ISL_18779291, EPI_ISL_18779337, EPI_ISL_18779563, EPI_ISL_18779844, EPI_ISL_18779864, EPI_ISL_18779875, EPI_ISL_18779934, EPI_ISL_18779968, EPI_ISL_18780053, EPI_ISL_18780075, EPI_ISL_18780298, EPI_ISL_18780341, EPI_ISL_18780385, EPI_ISL_18780436, EPI_ISL_18780516, EPI_ISL_18780646, EPI_ISL_18780660, EPI_ISL_18780664, EPI_ISL_18780766, EPI_ISL_18780793, EPI_ISL_18780854, EPI_ISL_18780866-18780867, EPI_ISL_18780935, EPI_ISL_18780969, EPI_ISL_18780991, EPI_ISL_18781042, EPI_ISL_18781047, EPI_ISL_18781072, EPI_ISL_18781131, EPI_ISL_18781162
@FedeGueli FedeGueli changed the title JN.1.4 + S:N185D (NY, 118sequences) JN.1.4 + S:N185D (NY, 169 sequences) Jan 25, 2024
@FedeGueli FedeGueli changed the title JN.1.4 + S:N185D (NY, 169 sequences) JN.1.4 + S:N185D ( 169 sequences US, Canada, South Korea) Jan 25, 2024
@FedeGueli
Copy link
Contributor Author

169 expanding to South Korea and Canada

@FedeGueli FedeGueli changed the title JN.1.4 + S:N185D ( 169 sequences US, Canada, South Korea) JN.1.4 + S:N185D ( 251 sequences, 7 countries) Jan 31, 2024
@FedeGueli
Copy link
Contributor Author

251 now widespread in different countries and 4 continents , @corneliusroemer i suggest to designate it.

@FedeGueli FedeGueli changed the title JN.1.4 + S:N185D ( 251 sequences, 7 countries) JN.1.4 + S:N185D ( 293 sequences, 8 countries) Feb 1, 2024
@FedeGueli
Copy link
Contributor Author

293 new country new continent.

@Mydtlwn
Copy link
Contributor

Mydtlwn commented Feb 2, 2024

@corneliusroemer

@corneliusroemer corneliusroemer added this to the JN.1.4.2 milestone Feb 2, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants