JN.1.1+S:S31F+S:R346T(Designated LC.1)+S:F456L(3 seqs, 2 countries)

[xz-keg]

From sars-cov-2-variants/lineage-proposals#1157

JN.1.1+C21654T(S:S31F)

GISAID query: C21654T,C11747T,C1762A,-9142,-19011,-14070
No. of seqs: 51(Australia 1 Austria 1 Canada 2 Dominician Republic 4 France 1 India 10 Israel 2 UK 1 Singapore 2(2 from China) South Korea 1 Spain 3 Switzerland 1 USA 22(1 from Australia))

First: EPI_ISL_18445258, 2023-10-23, Singapore from China
Latest: EPI_ISL_18886466, 2024-2-2, USA from Australia

Query for S:R346T branch: C21654T,C1762A,G22599C (9 seqs)
Query for S:F456L further branch: C21654T,C1762A,G22599C,T22928C (3 seqs)

There is also a C9142T branch under this. However the correct order of that one shall be JN.1.1+C9142T+S:S31F. So that one is excluded in query.

Some seqs are placed elsewhere due to artefact reversions. They shall belong to this branch.

usher

[FedeGueli]

10 with 346T, Illinois +1

[xz-keg]

Designated JN.1.1.7

[xz-keg]

Continue tracking the S:R346T branch, now 10 seqs from USA, India, Austria and Australia(via GBW)

[FedeGueli]

Continue tracking the S:R346T branch, now 10 seqs from USA, India, Austria and Australia(via GBW)

it is also branch 40 in # 1089

designated via e312db5

[xz-keg]

14, Japan(via GBW)

There is an additional S:F456L branch for this. Added in description.

[FedeGueli]

14, Japan(via GBW)

There is an additional S:F456L branch for this. Added in description.

Yeah it is also Branch 40 of # 1089

[xz-keg]

Designated LC.1

[xz-keg]

The S:F456L sub-branch seems no seq since 2024-3-15, close this.

[FedeGueli]

dffbf6a