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KP.2.3.11+S:R190S,K478T(rev)(23 seqs, >10 places ) #2787

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xz-keg opened this issue Sep 26, 2024 · 12 comments
Open

KP.2.3.11+S:R190S,K478T(rev)(23 seqs, >10 places ) #2787

xz-keg opened this issue Sep 26, 2024 · 12 comments

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@xz-keg
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xz-keg commented Sep 26, 2024 •
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From branch 18 of sars-cov-2-variants/lineage-proposals#1771

sub branch of #2668
KP.2.3+del21653_21655(S:S31-)+C28714T+A6184C(Orf1a:R1973S)+A29647G+C21691T,G22132T,A22995C(S:R190S,K478T rev)

GISAID query: C28714T, A6184C, G22132T,-22995
No. of seqs: 14(Canada 1 UK 3 USA 10(NJ local, GBW from India, France and Taiwan))

First: EPI_ISL_19300639, USA from India, 2024-7-18
Latest: EPI_ISL_19436790, USA from India, 2024-9-15

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@xz-keg xz-keg mentioned this issue Sep 26, 2024
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@FedeGueli
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+1 Australia

@xz-keg xz-keg changed the title KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(14 seqs, 6 places) KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(15 seqs, 7 places) Sep 26, 2024
@xz-keg xz-keg changed the title KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(15 seqs, 7 places) KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(15 seqs, 7 places with continuous GBW from India) Sep 27, 2024
@xz-keg
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xz-keg commented Sep 27, 2024

+1 Denmark

@xz-keg xz-keg changed the title KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(15 seqs, 7 places with continuous GBW from India) KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(16 seqs, 8 places with continuous GBW from India) Sep 27, 2024
@ryhisner
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Same lineage as this one.
#2668

@xz-keg
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xz-keg commented Sep 28, 2024

Same lineage as this one. #2668

This one shall be a sub-lineage of that one, getting S:R190S and S:K478T rev.

@FedeGueli
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Same lineage as this one. #2668

This one shall be a sub-lineage of that one, getting S:R190S and S:K478T rev.

Yeah please add the reference in the main proposal.

@FedeGueli
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19, Sweden

@xz-keg xz-keg changed the title KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(16 seqs, 8 places with continuous GBW from India) KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(19 seqs, 9 places with continuous GBW from India) Oct 6, 2024
@xz-keg
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xz-keg commented Oct 11, 2024

21, Australia-SA(previously NSW)

@xz-keg xz-keg changed the title KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(19 seqs, 9 places with continuous GBW from India) KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(21 seqs, 10 places with continuous GBW from India) Oct 11, 2024
@DailyCovidCases
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Now 23 seqs, slowing down now

@FedeGueli
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Now 23 seqs, slowing down now

not that much

@xz-keg
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xz-keg commented Oct 17, 2024

+1 Bahrain

@xz-keg xz-keg changed the title KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(21 seqs, 10 places with continuous GBW from India) KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(22 seqs, >10 places with continuous GBW from India) Oct 17, 2024
@FedeGueli
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This now is a sub branch of KP.2.3.11 (Orf1a:R1973S)

@xz-keg xz-keg changed the title KP.2.3+S:S31del+Orf1a:1973S+S:R190S,K478T(rev)(22 seqs, >10 places with continuous GBW from India) KP.2.3.11+S:R190S,K478T(rev)(22 seqs, >10 places with continuous GBW from India) Oct 26, 2024
@xz-keg
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xz-keg commented Oct 27, 2024

+1 USA-CA

@xz-keg xz-keg changed the title KP.2.3.11+S:R190S,K478T(rev)(22 seqs, >10 places with continuous GBW from India) KP.2.3.11+S:R190S,K478T(rev)(23 seqs, >10 places ) Oct 27, 2024
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@xz-keg @ryhisner @FedeGueli @DailyCovidCases