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NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(26 seqs, 10 places) #2799

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xz-keg opened this issue Oct 6, 2024 · 17 comments
Open

NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(26 seqs, 10 places) #2799

xz-keg opened this issue Oct 6, 2024 · 17 comments

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@xz-keg
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xz-keg commented Oct 6, 2024 •
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From sars-cov-2-variants/lineage-proposals#1742

KP.2.3+S:S31del+A22080G(S:Q173R)

GISAID query: C22000A, A22080G,G25593T,-28714
Query for T22N:A22080G,C21627A,T3565C
Query for T22N + S:Q146P: A22080G,T14136A,T3565C
Query for T22N+S:R190T: A22080G,C21627A,T3565C,G22131C
No. of seqs: 70(Brazil 7(DF,GO,MS) Canada 3(AB,BC,ON) UK 2 Germany 3(BE,NW,SL) Iceland 1 Ireland 2 Japan 1(from Mongolia) Netherlands 3 Sweden 1 Switzerland 1 USA 45(CA, CO,CT,GA, HI,IA,IL,MD,MN, NE,NJ,NY,OH, PA,SC,SD,TX, UT,VA,WI,GBW from Greece))

First: EPI_ISL_19183126, USA-OH, 2024-5-1
Latest: EPI_ISL_19430297, Brazil-MS, 2024-9-12

usher
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@FedeGueli
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9 for 22N branch

@FedeGueli
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10 for 22N branch

@xz-keg
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xz-keg commented Oct 16, 2024

75-12-2 now

@xz-keg xz-keg changed the title KP.2.3+S:Q173R(68 seqs, >10 places, 8 with S:T22N, 2 with further S:146P) KP.2.3+S:Q173R(75 seqs, >10 places, 12 with S:T22N, 2 with further S:146P) Oct 16, 2024
@xz-keg
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xz-keg commented Oct 20, 2024

There is a S:R190T sub-branch under the T22N branch emerging.

@xz-keg xz-keg changed the title KP.2.3+S:Q173R(75 seqs, >10 places, 12 with S:T22N, 2 with further S:146P) KP.2.3+S:Q173R(82 seqs, >10 places, 20 with S:T22N, 2 with further S:146P, 3 with S:R190T) Oct 20, 2024
@xz-keg xz-keg changed the title KP.2.3+S:Q173R(82 seqs, >10 places, 20 with S:T22N, 2 with further S:146P, 3 with S:R190T) KP.2.3+S:Q173R(82 seqs, >10 places, 20 with S:T22N, 2 with further S:146P, 3 with further S:R190T) Oct 20, 2024
@xz-keg
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xz-keg commented Oct 20, 2024

82-20-2/3 now.

@FedeGueli
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triple N Glycan for the last branch spotted.

@FedeGueli
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Designated KP.2.3.9 starting from S:Q173R
and NG.1 starting with S:T22N
via 4744b7a#diff-ead4244ff49c81bc758e9f068f5ef42156bd985b9c86de8fa4d6fcd7f2829090R1177

@xz-keg xz-keg closed this as completed Oct 24, 2024
@FedeGueli
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4 for the triple N Glycan 190T branch.

@FedeGueli
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6 for the TRIDENT of N Glycan with 190T with 2 GBW samples from a patient from Brazil Again

@FedeGueli
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6 for the TRIDENT of N Glycan with 190T with 2 GBW samples from a patient from Brazil Again

i suggest to propose it back in the secondary repo if you have time

@Over-There-Is
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R190T is 24 now

@FedeGueli
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R190T is 24 now

@xz-keg please reopen in the secondary repo

@xz-keg xz-keg reopened this Feb 8, 2025
@xz-keg xz-keg changed the title KP.2.3+S:Q173R(82 seqs, >10 places, 20 with S:T22N, 2 with further S:146P, 3 with further S:R190T) KP.2.3.9(S:Q173R)+S:T22N(159)+S:R190T(24) Feb 8, 2025
@xz-keg
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xz-keg commented Feb 8, 2025 •
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R190T is 24 now

@xz-keg please reopen in the secondary repo

reopen here as sub-branch of NG.1

It is in Brazil-MS,TJ,SC,DF,SP,SE,RN and Bolivia.

@xz-keg xz-keg changed the title KP.2.3.9(S:Q173R)+S:T22N(159)+S:R190T(24) NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(24) Feb 8, 2025
@xz-keg xz-keg changed the title NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(24) NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(24 seqs, 8 places) Feb 8, 2025
@FedeGueli
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R190T is 24 now

@xz-keg please reopen in the secondary repo

reopen here as sub-branch of NG.1

It is in Brazil-MS,TJ,SC,DF,SP,SE,RN and Bolivia.

thanks

@xz-keg
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xz-keg commented Feb 17, 2025

+1 USA-WI

@xz-keg xz-keg changed the title NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(24 seqs, 8 places) NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(25 seqs, 9 places) Feb 17, 2025
@xz-keg
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xz-keg commented Feb 23, 2025

+1 France

@xz-keg xz-keg changed the title NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(25 seqs, 9 places) NG.1(KP.2.3+S:Q173R+S:T22N)+S:R190T(26 seqs, 10 places) Feb 23, 2025
@FedeGueli
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+1 France

first in 2025 and very recent one

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@xz-keg @Over-There-Is @FedeGueli