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XEC+Orf1a:A599T+S:V1264L(70 seqs, >10 places) #2886

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xz-keg opened this issue Feb 2, 2025 · 2 comments
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XEC+Orf1a:A599T+S:V1264L(70 seqs, >10 places) #2886

xz-keg opened this issue Feb 2, 2025 · 2 comments

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@xz-keg
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xz-keg commented Feb 2, 2025

From branch 39 of sars-cov-2-variants/lineage-proposals#2088
XEC+G2060A(Orf1a:A599T)+G25352T(S:V1264L)

GISAID query: G25352T, G2060A, C19716T,-22107, -T23104A ,-28378,-10852,-G677A, -24199,-A424G,-C5178T (may increase number of -s due to convergence)
No. of seqs: 41(Canada 6(NB,NS,ON,BC) Denmark 6 Finland 4 France 1 Germany 1 Ireland 2 Italy 3 Japan 1 Slovenia 2 Spain 1 Sweden 2 Thailand 1 USA 8(AZ,CA,RI,UT) UK 3)

First: EPI_ISL_19480061, Canada-BC, 2024-9-16
Latest: EPI_ISL_19691550, Canada-ON, 2025-1-14

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@xz-keg xz-keg mentioned this issue Feb 2, 2025
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@FedeGueli
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43 with a new sample from Ireland with 441F and 478R : EPI_ISL_19701217

@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:V1264L(41 seqs, >10 places) XEC+Orf1a:A599T+S:V1264L(45 seqs, >10 places) Feb 9, 2025
@FedeGueli
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59 with a batch from Finland

@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:V1264L(45 seqs, >10 places) XEC+Orf1a:A599T+S:V1264L(63 seqs, >10 places) Feb 23, 2025
@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:V1264L(63 seqs, >10 places) XEC+Orf1a:A599T+S:V1264L(70 seqs, >10 places) Feb 28, 2025
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