Predicting CDS regions for gene fusions with PhyloCSFpp?

[apsteinberg]

Hi there,

Thanks for building this great tool! I was wondering if PhyloCSF++ can be used to predict CDS regions for RNA fusions? I have RNA gene fusions for which I have a csv file of fusion breakpoints and a fasta file with cDNA sequences at those breakpoints, and I would like to predict what the potential fusion proteins are at the sites of these gene fusions.

Thanks!

Best,
Asher