-
Notifications
You must be signed in to change notification settings - Fork 2
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Install/Run Error #2
Comments
This looks like an error caused by Pytorch; please follow the instructions from this Pytorch issue thread: In short, you might have to install the latest nightly version of pytorch. Let me know if that fixes the issue or if you need further help. |
Thanks @cpwardell. I appreciate your help! I reinstalled torch but then it started giving another error as below: It turns out that this error was due to an older version of acvl_utils(more here) I then tried installing skellytour on a newer version of Python. This time it worked and installed the correct version of acvl_utils. Per Skellytour documentation, the 'Skellytour' command gave the expected output. But when I ran it on our dataset using command
Thanks! |
I've been sick, but am back now. I'll have a look at this and get back to you shortly. |
I fixed it, at least it works on my end. I bumped the Python version to 3.10 which fixes all the dependencies, and I updated the pyproject.toml file and the documentation so nobody else should have this issue. The code below should set up a new working environment for you, I'm assuming you named your conda environment "skellytour":
Let me know if this resolves your issue. |
Thanks for looking into this! Hope you are doing well now. I was able to get to work on Python 3.12 with slight changes soon after I posted that error. Trying it on our data now. Would it work on dual energy CT? Are there specific CT sequences it needs? And is there any pre-processing needed on the input data? |
It doesn't require any specific preprocessing and should work with dual-energy CT. If you put some data online somewhere, I'll have a look myself. |
Thanks @cpwardell. Unfortunately, I won't be able to share data. I will try and let you know how it goes. |
Hi @cpwardell,
Thanks for the nice work! I wanted to try it out but running into issues, likely with installation. I followed the installation instructions but when I run 'skellytour' on the terminal, it gives the below error.
Are there other dependencies that I need installed on the system?
I am trying this on an Ubuntu system, btw.
Would you be able to help?
The text was updated successfully, but these errors were encountered: