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DESCRIPTION
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DESCRIPTION
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Package: bdc
Title: Biodiversity Data Cleaning
Version: 1.1.5
Authors@R: c(
person("Bruno", "Ribeiro", , "ribeiro.brr@gmail.com", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-7755-6715")),
person("Santiago", "Velazco", , "sjevelazco@gmail.com", role = "aut",
comment = c(ORCID = "0000-0002-7527-0967")),
person("Karlo", "Guidoni-Martins", , "kguidonimartins@gmail.com", role = "aut",
comment = c(ORCID = "0000-0002-8458-8467")),
person("Geiziane", "Tessarolo", , "geites@gmail.com", role = "aut",
comment = c(ORCID = "0000-0003-1361-0062")),
person("Lucas", "Jardim", , "lucas.ljardim9@gmail.com", role = "aut",
comment = c(ORCID = "0000-0003-2602-5575")),
person("Steven", "Bachman", , "S.Bachman@kew.org ", role = "ctb",
comment = c(ORCID = "0000-0003-1085-6075")),
person("Rafael", "Loyola", , "rdiasloyola@gmail.com", role = "ctb",
comment = c(ORCID = "0000-0001-5323-2735"))
)
Description: It brings together several aspects of biodiversity
data-cleaning in one place. 'bdc' is organized in thematic modules
related to different biodiversity dimensions, including 1) Merge
datasets: standardization and integration of different datasets; 2)
Pre-filter: flagging and removal of invalid or non-interpretable
information, followed by data amendments; 3) Taxonomy: cleaning,
parsing, and harmonization of scientific names from several taxonomic
groups against taxonomic databases locally stored through the
application of exact and partial matching algorithms; 4) Space:
flagging of erroneous, suspect, and low-precision geographic
coordinates; and 5) Time: flagging and, whenever possible, correction
of inconsistent collection date. In addition, it contains
features to visualize, document, and report data quality – which is
essential for making data quality assessment transparent and
reproducible. The reference for the methodology is Bruno et al. (2022)
<doi:10.1111/2041-210X.13868>.
License: GPL (>= 3)
URL: https://brunobrr.github.io/bdc/ (website)
https://github.com/brunobrr/bdc
BugReports: https://github.com/brunobrr/bdc/issues
Imports: CoordinateCleaner, doParallel, dplyr, DT, foreach, fs,
ggplot2, here, magrittr, purrr, qs, readr, rgnparser,
rnaturalearth, sf (>= 1.0.5), stringdist, stringi, stringr,
taxadb (>= 0.1.3), tibble, tidyselect
Suggests: contentid (>= 0.0.15), covr, cowplot, DBI, duckdb (>= 0.3.2),
knitr (>= 1.31), maps, markdown, rappdirs, raster, remotes,
rlang (>= 1.0.1), rmarkdown, rnaturalearthdata, sp, rvest,
xml2, testthat (>= 3.0.0)
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-gb
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2024-12-17 17:20:06 UTC; brunoribeiro
Author: Bruno Ribeiro [aut, cre] (<https://orcid.org/0000-0002-7755-6715>),
Santiago Velazco [aut] (<https://orcid.org/0000-0002-7527-0967>),
Karlo Guidoni-Martins [aut] (<https://orcid.org/0000-0002-8458-8467>),
Geiziane Tessarolo [aut] (<https://orcid.org/0000-0003-1361-0062>),
Lucas Jardim [aut] (<https://orcid.org/0000-0003-2602-5575>),
Steven Bachman [ctb] (<https://orcid.org/0000-0003-1085-6075>),
Rafael Loyola [ctb] (<https://orcid.org/0000-0001-5323-2735>)
Maintainer: Bruno Ribeiro <ribeiro.brr@gmail.com>
Repository: CRAN
Date/Publication: 2024-12-17 17:40:02 UTC