local.Docker

FROM jupyter/minimal-notebook

SHELL ["/bin/bash", "--login", "-c"]

# Create output director
RUN mkdir "output"

# Create the environment:
COPY environment.yml .
RUN conda env create --file environment.yml

# Make RUN commands use the new environment:
RUN source /opt/conda/etc/profile.d/conda.sh && \
    conda activate CiS2021-hackathon-environment && \
    yggconfig && \
    ygginfo --verbose && \
    yggcompile c cpp fortran

RUN echo "source activate CiS2021-hackathon-environment" > ~/.bashrc

VOLUME /home/${NB_USER}/work

# Copy the files
WORKDIR /home/${NB_USER}/work
COPY input /home/${NB_USER}/work/input
COPY meshes /home/${NB_USER}/work/meshes
COPY models /home/${NB_USER}/work/models
COPY yamls /home/${NB_USER}/work/yamls
COPY solutions /home/${NB_USER}/work/solutions
COPY *.ipynb /home/${NB_USER}/work
RUN mkdir "/home/${NB_USER}/work/output"
RUN fix-permissions "/home/${NB_USER}/work/output" && fix-permissions "/home/${NB_USER}/work/models"
COPY launch_local.sh .

# /home/${NB_USER}/work


EXPOSE 8888
ENTRYPOINT ["/bin/bash", "launch_local.sh"]