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Phase 2
csw edited this page Jul 10, 2012
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15 revisions
See also outstanding questions.
July 13:
- Fix discrepancy in result counts with bx-python
- Compile list of filter/query features in other implementations
- Stitch alignment blocks together
- Expose synteny data from 'i' lines better
- Revisit Enumerator usage
- Rewind parser after reaching EOF
- Add support for multiple indexes (and MAF files)
July 20:
- Search by feature from GFF3/GTF files
- Investigate compression formats to support
- Repackage UCSC bin, 2bit, etc. code
- Convert to bio-alignment representations
July 27:
- Compression work?
August 3:
- Parallelize sequential parsing
- Revisit index overlap optimization
- Explore generalizing the indexing code
August 10: