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Step 2 requires SamTools>=1.11? #9

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aforestsomewhere opened this issue Nov 18, 2023 · 1 comment
Closed

Step 2 requires SamTools>=1.11? #9

aforestsomewhere opened this issue Nov 18, 2023 · 1 comment

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@aforestsomewhere
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Hello,

Small suggestion to update the docs to specify that Samtools v1.11 or later is required in Step 2 to cope with the MM flags during mapping (samtools/htslib#1418).
@alexcritschristoph
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Fixed in #14

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@alexcritschristoph @aforestsomewhere