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...and xy_pixel_size is absent in our 1.3.0 zenodo datasets (and oftentimes from the microscopes if the pixel size isn't calibrated).
For example:
$ iohub info 2022_08_04_recOrder_pytest_20x_04NA/2T_3P_16Z_128Y_256X_Kazansky_1/
Reading file: /Users/talon.chandler/Desktop/0.4.0-release/misc/recOrder_test_data/2022_08_04_recOrder_pytest_20x_04NA/2T_3P_16Z_128Y_256X_Kazansky_1
Traceback (most recent call last):
File "/opt/anaconda3/envs/recorder-dev/bin/iohub", line 8, in <module>
sys.exit(cli())
File "/opt/anaconda3/envs/recorder-dev/lib/python3.10/site-packages/click/core.py", line 1157, in __call__
return self.main(*args, **kwargs)
File "/opt/anaconda3/envs/recorder-dev/lib/python3.10/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
File "/opt/anaconda3/envs/recorder-dev/lib/python3.10/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/opt/anaconda3/envs/recorder-dev/lib/python3.10/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/opt/anaconda3/envs/recorder-dev/lib/python3.10/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
File "/Users/talon.chandler/iohub/iohub/cli/cli.py", line 43, in info
print_info(file, verbose=verbose)
File "/Users/talon.chandler/iohub/iohub/reader.py", line 267, in print_info
reader.xy_pixel_size,
File "/Users/talon.chandler/iohub/iohub/multipagetiff.py", line 309, in xy_pixel_size
raise AttributeError("XY pixel size cannot be determined.")
AttributeError: XY pixel size cannot be determined.. Did you mean: '_xy_pixel_size'?
The text was updated successfully, but these errors were encountered:
...and
xy_pixel_size
is absent in our 1.3.0 zenodo datasets (and oftentimes from the microscopes if the pixel size isn't calibrated).For example:
The text was updated successfully, but these errors were encountered: