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will not work - there is no way to view PM data in MM. I think Henry tried to develop something for that, but it hasn't worked for me. We may be able to use the PM NDViewer for LF data, but if we can view LS data in napari, then it's just as easy to view LF data in napari as well.
My plan is to start with on-the-fly viewing of LF and LS raw data in napari in a very similar fashion to how the native PM napari viewer works. We'll just be opening two arrays rather than one.
The next step would be to view deskewed LF volumes. I agree that the napari-ndtiffs plugin may be helpful here (tho it didn't work for me right away). This is decoupled from #13 as we'll be using the native napari transform functionality, rather than resampling with skimage and saving the deskewed array.
Viewing the registered volumes would be the ultimate goal. We'll need to figure out how to do registration first in #14
Is the data acquired with dragonfly-automation also written in NDTIFF format? I am able to open the whole dataset with @ziw-liu's Micro-Manager 2 apptainer.
My plan is to start with on-the-fly viewing of LF and LS raw data in napari in a very similar fashion to how the native PM napari viewer works. We'll just be opening two arrays rather than one.
Even if we can Micro-Manager to view label-free data, viewing all the data in napari makes even more sense. We should try this route and see how it works.
I suggest building a viewer in iterations as follows:
Try this plugin works.
Looks like @ieivanov is ready to implement (1) and @edyoshikun can review.
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