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Clinical trials in a box

Features include:

  • 100% browser based
  • High quality GUI (incl. keyboard navigation, unlimited undo / redo)
  • State tracking trials database
  • Per trial document repository
  • Per trial subject log
  • Fulltext search in realtime
  • Human ressources management (working hours, holidays, certificate repos)
  • Groupware (personalized calendar / iCAL, meetings)
  • Visit interval planning (incl. cross-checks with human ressources)
  • Source data management / worksheets
  • Billing / Accounting / Reimbursements
  • Finances controlling
  • Forms / reporting framework
  • RESTful API
  • Full audit trail

Manual: https://github.com/daboe01/ClinicalManual/blob/master/manual.pdf?raw=true

Demo from Docker

docker run -t -i  -p 3004:3004 daboe01/clinical:latest

INSTALL

# you need build-essentials (linux) or XCode (mac)
# the easiest way to get Postgres up and running on a mac is Postgres.app
# (on linux do not forget to additionally install the postgres-dev package)
createdb  aug_clinical
createuser postgres -s
createuser root -s
cat sql_template.sql | psql aug_clinical
#
# we need a current TeX distribution such as <https://tug.org/mactex/>
# perl is already installed on linux and mac but we need quite a bunch of non-core perl modules
cpan Math::Expression String::Random Mojolicious Mojolicious::Plugin::Database Mojolicious::Plugin::RenderFile SQL::Abstract::More Apache::Session::File Spreadsheet::WriteExcel Spreadsheet::ParseExcel Business::IBAN DBD::Pg Date::ICal Data::ICal Data::ICal::Entry::TimeZone Net::LDAP DateTime File::Find::Rule MIME::Lite Net::IMAP::Simple Email::MIME Email::MIME::Attachment::Stripper
# now download this repo and cd into it
# change the constants on the top of this file as needed
# this includes the directory paths, passwords and the database connection string:
vi backend.pl
# now you are ready to launch
morbo backend.pl # this starts the testing server
# now locate your favourite web browser to http://localhost:3000/Frontend/index.html
# the username is pi with no password
# (passwords are not enforced unless you modify the helper LDAPChallenge within backend.pl appropriately)
#
# you may eventually want to automatically launch hypnotoad backend.pl (production server) during system boot

Update database schema

# from github
pg_dump aug_clinical_incoming -s  >sql_template_new.sql 
# from production
pg_dump aug_clinical -s  >sql_template_old.sql 
java -jar apgdiff-2.4/apgdiff-2.4.jar sql_template_old.sql sql_template_new.sql > diff.sql
psql -d aug_clinical -a -f diff.sql

LICENCE

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.