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sir.xml
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sir.xml
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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1">
<model id="SIR" name="SIR Epidemic model" substanceUnits="item" timeUnits="second" volumeUnits="litre" extentUnits="item">
<listOfCompartments>
<compartment id="Pop"/>
</listOfCompartments>
<listOfSpecies>
<species id="S" compartment="Pop" initialAmount="100" hasOnlySubstanceUnits="true"/>
<species id="I" compartment="Pop" initialAmount="5" hasOnlySubstanceUnits="true"/>
<species id="R" compartment="Pop" initialAmount="0" hasOnlySubstanceUnits="true"/>
</listOfSpecies>
<listOfReactions>
<reaction id="Infection" reversible="false">
<listOfReactants>
<speciesReference species="S" stoichiometry="1"/>
<speciesReference species="I" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="I" stoichiometry="2"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> beta </ci>
<ci> S </ci>
<ci> I </ci>
</apply>
</math>
<listOfLocalParameters>
<localParameter id="beta" value="0.1"/>
</listOfLocalParameters>
</kineticLaw>
</reaction>
<reaction id="Removal" reversible="false">
<listOfReactants>
<speciesReference species="I" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="R" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> gamma </ci>
<ci> I </ci>
</apply>
</math>
<listOfLocalParameters>
<localParameter id="gamma" value="0.5"/>
</listOfLocalParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>