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Hmm. I have not seen such errors before. We used pgcompacttable in a similar environment, so I think it's related to the database schema.
Could you produce reproducible example? I think restoring schema-only dump (pg_dump -s) in another database may still trigger this error. If so, dump can be reduced to some small example.
I get a lot of errors at startup
Use of uninitialized value in subtraction (-) at ./pgcompacttable line 1764.
./pgcompacttable --all --verbose -d database
Centos 7
Postgres 12.3
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