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Help: Tallymer support #2

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taranglute opened this issue Jan 22, 2018 · 1 comment
Open

Help: Tallymer support #2

taranglute opened this issue Jan 22, 2018 · 1 comment

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@taranglute
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I am not sure about below details can you please confirm,

Data structure and Sorting Algo: Enhanced suffix arrays/Counting using the lcp-interval tree
Approach: In-memory
The limit of k-size : Arbitrary large k-mer lengths.
Supports online k-mer frequency retrieval : Yes
Supports compressed file processing : No

@dbolser
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dbolser commented Feb 26, 2018

Sorry, these details should be answered by the tallymer author (sorry I can't help).

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