Similarly named files in different directories are ignored

[jasonkarns]

It appears that directory structure is essentially ignored which means that two files with the same but in different directories get treated as one.

/root
  /dir1
    file1
  /dir2
    file1

The graph will only show dependencies for /root/dir1/file1 while /root/dir2/file1 is ignored entirely. It doesn't appear in the graph and it doesn't track any dependencies within dir2/file1

[dcadenas]

Thanks for reporting it. I'll take a look as soon as I can.