options

[hurchu]

Hi,

fastq-sort [OPTION]... [FILE]...
Concatenate and sort FASTQ files and write to standard output.
Options:
-r, --reverse sort in reverse (i.e., descending) order
-I, --id sort alphabetically by read identifier
-N, --idn sort alphanumerically by read identifier according to "samtools sort -n"
-S, --seq sort alphabetically by sequence
-R, --random randomly shuffle the sequences
--seed[=SEED] seed to use for random shuffle.
-G, --gc sort by GC content
-M, --mean-qual sort by median quality score
-h, --help print this message
-V, --version output version information and exit

But when I tried fastq-sort -N, invalid option -- 'N'. After checking the script, it should be 'n'.

Could you please modify the help information. Thanks!

Best,

[greenstick]

+1 - I found with fastq-sort -I and --id don't work, the source seems to indicate it should be -i.