Usage (running from repo root directory):
PYTHONPATH="src/:${PYTHONPATH}" python \
src/runner.py \
--hcp-zip-path PATH_TO_OUTPUT_OF_DICTDUMP \
--save-path params/
In order to run the data prep script scripts/dict_dump.sh, which in turn runs src/zip_dump.py, we need a CSV with the following columns:
index
subj_id
path_1200
path_mask
path_7T
path_1200_bvals
path_1200_bvecs
path_7T_bvals
path_7T_bvecs