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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Generated by auto-changelog.

Merged

  • Fix PubMed URL resolve for empty result #200
  • Update vagus flatmap UBERON identifier #199
  • UI Updates #198

Commits

  • Fix pubmed url resolve for empty result 93a7b9e
  • Fix pathway container close position without using fixed width for scrollbar issue dac1bd7
  • Fix the gap between left border and pathway container close button 78edbe3

v1.5.5 - 2024-10-09

Commits

v1.5.4 - 2024-10-09

Commits

  • Update vue and element-plus. 5fee243

v1.5.3 - 2024-10-09

Merged

  • Security updates #196
  • Patch release 1.5.2 #195
  • Update flatmap-viewer to show marker for vagus nerve #194
  • Fix auth issue #193

Commits

  • Remove unused cypress/webpack-dev-server for security fix 381d947
  • Switch from vuese/parser to vue-docgen-api for componennt documenntation 27455f1
  • Update changelog.md 66c0dbb

v1.5.1 - 2024-09-19

Commits

  • Fix an issue with biological sex not set correctly when taxon is not set on state. 02a3b1e

v1.5.0 - 2024-09-19

Merged

  • Handle pubmed query differently. #192

v1.4.4 - 2024-09-12

Commits

  • Update flatmap-viewer which fixes an issue on the minimap. 4b763b9

v1.4.3 - 2024-09-03

Merged

  • Update flatmap-viewer which fixes an issue with geojson related call. #191

Commits

  • Update flatmap-viewer which fixes an issue with selectGeoJSONFeatures call. 0745f7e

v1.4.2 - 2024-09-02

Merged

  • Help mode bugfix #190
  • Remove error log from abortController #189

Commits

  • Fix help mode svg icon highlight for Safari 524f589
  • Update README.md 71e3072
  • Fix help-mode index f77a321

v1.4.1 - 2024-08-22

Merged

  • Update to Flatmap-viewer version 3.1.4. #187

Commits

v1.4.0 - 2024-08-16

Merged

  • Add species legend to the FC map #186
  • Fix beta tooltip index #185
  • Map annotation shortcut #183
  • Fix missing features alert #182
  • Replace global variable with markRaw #181

Commits

  • Modify code to provide change viewing mode api adca34e
  • Update to the latest packages. 6bf41fd
  • Beta release v1.3.2-beta.2 883760f

v1.3.2 - 2024-07-22

Merged

  • Release v-1.3.2 #180
  • Hide connectivity info for empty tooltip data #179

Commits

  • Fix empty tooltip checking function 54a8498
  • Update to beta version 1.3.2-beta.1 5476730
  • Rename function to be more meaningful aa370f8

v1.3.1 - 2024-07-10

Commits

  • Update map-utilties to version 1.3.0. 013c45b

v1.3.0 - 2024-07-10

Merged

  • Display connectivity info without obstructing current map view #175
  • Revert "Fix PubMed URL issue" #177
  • Fix PubMed URL issue #176
  • Utilities package #174

Commits

  • Replace local components by map-utilities package e59cf6e
  • Update code for upcoming toolbar component 94e38f4
  • Update code for upcoming treecontrols component ab31662

v1.2.0 - 2024-06-24

Merged

  • Update to how modes are selected #170
  • Switch to latest version of flatmap-viewer #173
  • Update marker icon for help mode #6

Commits

  • Switch the mode selector to a title/subtitle style 13f1ff7
  • Switch network discover mode to 'neuron connections' mode and add help text 2d4f050
  • Maintain viewing modes order. bb1dc6a

v1.1.1 - 2024-06-06

Merged

  • UI updates for FC map pathway container #171
  • Now can handle single and double nodes at all times #169

Commits

  • Add a fix to cypress testing. aa8de18
  • Make improvements on TreeControls UI 72fe2ee
  • Update cypress testing. 266c29c

v1.1.0 - 2024-05-29

Merged

  • Remove origins from highlight in network explorer mode: #144
  • Toolbar icon style #168
  • fix toolbar when Drawn By specified #167
  • New draw feature for Annotator #142
  • Refactor #14
  • Add features alert #161
  • Supports the old help mode without help dialog. #166
  • Flatmap improvements - help text visible #165

Commits

  • Update package-lock.json. 4300265
  • Remove console message. eeaa6cc
  • move dialog display control into draw tool component aafa7a8

v1.1.0-beta.3 - 2024-05-22

Merged

  • Highlight on species #127
  • Add relation between drawn features #13
  • Refactor annotator code #12
  • Send item details when adding an annotation. #11
  • A tidy up and pass more connection information to the annotation service #10
  • Annotator further development #8
  • Viewer changes merged #7
  • pull requirements #6
  • pull latest changes #4
  • Merge new changes #3
  • Vue3 migration #2

Commits

  • Merged in annotationn changes. 7b8cfcb
  • Merged in upstream changes. eeba37c
  • merged in upstream changes. 77ddcf7

v1.0.2 - 2024-05-15

Merged

  • Bugfix - Help Mode Tooltips #164
  • Add pathways checkbox events for data tracking #163

Commits

  • Fix featured dataset tooltip and help mode 883e6c5
  • Open drawer to show tooltips inside when help mode is activated 82b1ce6
  • Add open pubmed button click event 782145d

v1.0.1 - 2024-05-02

Merged

  • Add species switch in component testing #150

Commits

v1.0.0 - 2024-04-24

Merged

  • Fix popup close error #160
  • Fix tooltip arrow on top position #159
  • Fix api docs demo for pinia #158
  • Fix popup showing on switching viewingMode #157
  • Popup UI Updates #156
  • Fix tooltip arrows UI for corner positions [Bugfix] [UI] #153
  • Update vitepress config with alias to resolve dir #148
  • Update flatmapvuer. #147
  • Add pinia in Cypress component test #4
  • Annotation authentication #143
  • Fix a bug causing annotation to not open the editing dialog. #9
  • Update docs content #146
  • Cleanup unused npm packages #137
  • Make flatmap query helper functions more robust #141
  • Change Flight Path Option #140
  • Feature/3d fc map #139
  • Hotfix - el-radio props incorrectly changed #136
  • Cypress testing Vue 3 #134
  • Update test and dependencies. #4
  • APIs Documentation #133
  • Update species selectbox style for hidden contents #135
  • Fix svg being slighlty to big for its container #132
  • Featured marker fix #128
  • Add missing interface #131
  • Add a property to disable UI elements #130
  • Vue3 migration #126
  • Remove warning #3
  • fetch vue3 migration changes #1
  • Allow html in "what's new": #125
  • Featured marker legend name fix #124

Commits

  • Add missing files 219c3fe
  • Remove vuese/cli for npm security vulnerabilities bc46469
  • Fix an issue with package-lock.json. 1d9b9e5

v0.5.9 - 2023-12-08

Merged

  • Annotation UI and connected path #123
  • Add the featured markers star to the legend with tooltip #122

Commits

v0.5.8 - 2023-11-07

Merged

  • Update package # #120
  • Add show/hide for details, add transition #119

v0.5.7 - 2023-09-14

Merged

  • Fix a few issues causing neuron search to fail #117
  • Revert "Add flatmap prov information button" #116
  • Add flatmap prov information button #115

Commits

  • Create a context card for the flatmap prov 546dca8
  • Strip out a lot of the context card content d4b5d31
  • Add centrelines toggle. 60c315e

v0.5.6 - 2023-08-08

Commits

  • Add an accidentally removed line. 3948001

v0.5.5 - 2023-08-07

Merged

  • Additional settings #114
  • Add hierarchical control (FC) and species information (AC) #113
  • Add label for what species provenance info comes from #110

Commits

  • Merge in upstream changes. 39bbcf7
  • Update to the latest flamtap-viewer. 50d25c3
  • Add open map UI. 11f993e

v0.5.4 - 2023-07-04

v0.5.3 - 2023-07-04

Merged

  • Couple of pop up fixes and remove an unused argument. #112
  • Remove unused request #111

Commits

  • Fix a couple of display issue with tooltip. 196e1a8
  • Remove unused variable. 521828d
  • Fix uberon map for connectivity not being saved as a variable 643690e

v0.5.2 - 2023-06-15

Commits

  • Fix an issue with flatmap queries not using the right name. eaf6167

v0.5.1 - 2023-06-15

Commits

  • Udpate dependencies. 943e51f
  • Revert changes in dependencies. 3a70807

v0.5.0 - 2023-06-12

Merged

  • Update build #107
  • Fix provenance logic: #109

Commits

  • Downgrade to vue 2.6.14 a81b049
  • Merge in upstream changes, f490c11
  • Update vue version to 2.7.14 5eeadec

v0.4.6 - 2023-06-01

0.4.6-fixes-2 - 2023-06-05

Commits

  • Search will display the label and location of the highest score result. c3b2e47

0.4.6-fixes-1 - 2023-06-02

Commits

  • Version 0.4.6-fixes-1 e8b60c3
  • Rename mapboxgl in css rules to maplibregl. 9040cc9

v0.4.6-fixes-0 - 2023-06-01

Commits

  • Fix an issue with poppver does not dismiss. c26cd14
  • Fix the version of flatmap-viewer at 0.2.3.2-b.4 d7692a2
  • 0.4.6 release. d6e0e01

v0.4.5 - 2023-06-01

Merged

  • Update beta text. #108
  • Fix pubmed resource logic #106

Commits

v0.4.2 - 2023-05-10

Commits

  • Fix an issue with setting state before mounted. 73d6cc1

v0.4.1 - 2023-05-10

Merged

  • Update controls and tidy up #105
  • Resolve promise list with 'true/false' for whether to display tooltip #104
  • Remove services from package.json #103
  • Switch class to function as it was breaking mapintegrated build #102
  • Queries refactor #101
  • V0.4.0 #100

Commits

v0.4.0 - 2023-04-04

Merged

  • Prov pop up feedback #97
  • Rename Change background colour to change settings. #96

Commits

  • Create a new vue component for the selection controls. aed5e35
  • update flatmap-viewer to 2.2.13 f8e0dc8
  • Update flatmap-viewer. 33c53dc

v0.3.15 - 2023-02-27

Merged

  • Fix minimap sizing issue and make sure flatmap-viewer 2.2.9 is used #95
  • Remove call to function that does not exist #94
  • Update package # and publish #93
  • Minimap hideable #92
  • Improve initialisation and search #91

Commits

  • Move code to flatmapvuer, fix transform origin a630ed8
  • Add an additional flag to allow label to be displayed with the searchAndShowResult function. 5f6c57b
  • Improve state loading. f695883

v0.3.12 - 2023-01-20

v0.3.12-fixes-0 - 2023-01-20

Merged

  • Permalink update #90
  • Now search on model for pubmed ids #85

Commits

  • Flatmapvuer now uses uuid to fetch the map when saved in state. af447d3
  • Cut down pubmedviewer, organise tooltip proccessing dde4b8b
  • Increment version number to 0.3.11. a7509fd

v0.3.10 - 2022-12-13

Commits

  • Update to the latest version of flatmap-viewer. 775fd65
  • Add css for other neruon type. a8df0c5
  • Start storing uuid when saving the state. 21cea3e

0.3.9 - 2022-12-08

Merged

  • Update to the latest flatmap #84

Commits

  • Update to flatmap-viewer 2.2.7 and change the way maps are found. c2ae329

0.3.8 - 2022-12-02

Merged

  • Add legends #83
  • Update node processing to display labels correctly #75
  • Switch to new colors #81
  • Run npm install and update package # #76
  • Latest changes message #74

Commits

  • Use the latest version of flatmap-viewer and update the endpoint. ecc5174
  • Begin working on legends. eb225cb
  • Fix the creation of labels from nodes c28653a

0.3.3 - 2022-08-19

Merged

  • Add success pop-up #71

Commits

  • Add props to display and customis the latest changes message. 494c3d8
  • Rename 'success' to 'latestChanges' 6bec159
  • Fix tooltip boolean numbers 76c4481

v0.3.1 - 2022-07-29

Merged

  • Add scrollbar to the pathway popups #70
  • Bump async from 2.6.3 to 2.6.4 #63
  • Bump terser from 4.8.0 to 4.8.1 #67
  • Bump minimist from 1.2.5 to 1.2.6 #61
  • Bump shell-quote from 1.7.2 to 1.7.3 #68
  • Bump eventsource from 1.1.0 to 1.1.2 #69

Commits

  • Switch to using scrollbar for tooltips 6467659
  • Increment to version 0.3.0 6cdebde
  • Update package # 9999102

v0.3.0 - 2022-07-22

Merged

  • Upstream downstream pop ups #64

Commits

  • Refactor axon->destination dendrite->origin 2e8ad3e
  • Update flatmap-viewer, no longer tooltips for nerve cuffs be23067
  • split up popup boolean and creation 5fe897c

v0.3.0-beta-2 - 2022-05-23

Commits

v0.3.0-beta-1 - 2022-05-23

Commits

  • Handle missing data gratefully. 875c5a0

v0.3.0-beta-0 - 2022-05-23

Commits

  • Create upstream-downstream tooltips 3d2215f
  • Add pubmed queries for nerve cuffs 81ec823
  • Make semicolons consistent and use provide/inject for apis 60bd15d

v0.2.5 - 2022-05-19

Merged

  • Build in element ui to avoid styles being used in global space. #65

v0.2.5-beta-1 - 2022-05-11

Merged

  • Pan zoom events. Icon updates. Show/hide UI APIs. #62
  • Bump url-parse from 1.5.3 to 1.5.10 #60
  • Bump follow-redirects from 1.14.7 to 1.14.8 #58
  • Fix an issue with icon #56
  • Fix a bug causing compilation error upstream. #55
  • Increment package version #54
  • Update tooltip for non-rat flatmaps #53
  • Use Scss instead. #52
  • Dynamic markers, outline and colour chooser. #51
  • Species check #49
  • Set background colour and opacity at start up. #3
  • Tehsurfer gazelle pop ups #2
  • Resolve conflicts and bugs. #1

Commits

  • Increment package version. 19f90a8
  • Stylesheets are now in scss. 4a944f3
  • Update package-lock.json f0afe8f

v0.1.33 - 2021-06-21

Merged

  • Improve tooltip style. #48
  • UI improvements #46
  • Update flatmap viewer which include an update on callback. #45
  • Add an option to set the flatmap api endpoint. #44
  • Implement saving/getting state of flatmap #43
  • Update dependencies. #42
  • Export is now named. Version updated to 0.1.28. #41
  • Now built without bundling external node modules. #40
  • Documentation #38
  • Fix Display all checkbox problem with reset. #37
  • Version0.1.25 #36
  • Version0.1.24 #35
  • Version0.1.23 #34
  • Tooltip update #33
  • Versions.1.22 #32
  • Version0.1.21 #31
  • Bump version to 0.1.20. #30
  • Added Help hovers #28
  • Add a button to toggle the background colour. #29
  • Version0.1.19 #27
  • Version0.1.18 #26
  • Version0.1.17 #25
  • Version0.1.16 #24
  • Version0.1.15 #23
  • Bump flatmap viewer and this package version. #22
  • Version0.1.13 #21
  • Version0.1.12 #19
  • Update flatmap viewer to 0.9.10. #18
  • Viewe0.9.9 test #1
  • Add emit for when flatmap is changed #17
  • Updaet flatmapviewer. #16
  • Bump version and make some stylistic changes. #15
  • Bump flatmap version to 0.9.4 #14
  • Add the apis required to display a popup. #13
  • Add the ability to adjust species at startup. #12
  • Increment version number #11
  • Update map viewer to v0.9.3 #10
  • Flatmap viewer 0.9 release #9
  • Add a multiflatmapvuer. #8
  • Remove undefined label from returned labels list. #7
  • Add ready event, getLabels and stylistic changes. #6
  • Add label to payload. #5
  • Fix a critical bug. #4
  • Add README.md. #3
  • Use resizeSensor to detect resizing. #2
  • First revision of the vue component of flatmap viwer. #1

Commits

  • Increment version to 0.1.33. 3202fa0
  • Increment flatmapviewer to 1.0.3 which fixes cases of labels. 7564d1d
  • Add more support for flatmap v0.9.2. b74b957