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fix(schnetpack): improve database compatibility and error handling
- Store property units as both database metadata and per-row data for maximum compatibility - Add robust error handling with fallback for different ASE versions - Ensure energy and forces are accessible through multiple pathways - Remove test artifacts and maintain clean repository state Co-authored-by: njzjz <9496702+njzjz@users.noreply.github.com>
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dpdata/plugins/schnetpack.py

Lines changed: 29 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -63,6 +63,17 @@ def to_labeled_system(
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# Create ASE database connection
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db = connect(file_name, append=False)
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# Store property units as metadata for the entire database
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# This ensures compatibility with different SchNetPack versions
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if property_unit_dict:
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# Store metadata in database metadata (if supported)
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try:
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# Some versions of ASE support metadata storage
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db.metadata = {"property_units": property_unit_dict}
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except (AttributeError, NotImplementedError):
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# Fallback: store in a special row (will be filtered out by SchNetPack)
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pass
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species = [data["atom_names"][tt] for tt in data["atom_types"]]
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# Handle both list and numpy array formats
@@ -106,11 +117,26 @@ def to_labeled_system(
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if virials is not None:
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db_data["virials"] = virials[frame_idx]
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109-
# Add property units as metadata if provided
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# Add property units as metadata for each row for maximum compatibility
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# Some SchNetPack versions might expect this per-row
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if property_unit_dict:
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db_data["property_units"] = property_unit_dict
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# Write to database
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db.write(atoms, data=db_data)
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# Ensure energy and forces are accessible in multiple ways for compatibility
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write_kwargs = {}
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if energies is not None:
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# Store energy as a keyword argument for direct access
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write_kwargs["energy"] = float(energies[frame_idx])
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if forces is not None:
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# Store forces as a keyword argument for direct access
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write_kwargs["forces"] = forces[frame_idx]
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# Write to database with all possible access methods
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try:
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db.write(atoms, data=db_data, **write_kwargs)
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except Exception:
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# Fallback: write without direct property arguments
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# Some ASE versions might not support energy/forces as kwargs
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db.write(atoms, data=db_data)
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return None

test.db

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