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When starting with a .hic file which contains KR, VR, and VR_SQRT corrections and I want to convert it to an .mcool with the KR correction in the "weight" column, I use the following steps:
Convert hic to cool hicConvertFormat -m "$myHic" --resolutions 5000 --inputFormat hic --outputFormat cool -o "${myHic/.hic/.cool}"
However, the second step throws the error message:
INFO:hicexplorer.hicConvertFormat:Correction factors are removed. They are not valid for any new created resolution.
I did not find any additional information on the docs but would anyone be able to provide some insight on this error, and suggestions on how to approach the conversion of a .hic to .mcool with KR correction?
The text was updated successfully, but these errors were encountered:
When starting with a
.hic
file which contains KR, VR, and VR_SQRT corrections and I want to convert it to an.mcool
with the KR correction in the "weight" column, I use the following steps:Convert hic to cool
hicConvertFormat -m "$myHic" --resolutions 5000 --inputFormat hic --outputFormat cool -o "${myHic/.hic/.cool}"
Convert cool to mcool with KR correction
hicConvertFormat -m ${myHic/.hic/.cool} --inputFormat cool --outputFormat mcool -o $name.KR.mcool --correction_name KR --resolutions 5000 10000 25000
However, the second step throws the error message:
I did not find any additional information on the docs but would anyone be able to provide some insight on this error, and suggestions on how to approach the conversion of a .hic to .mcool with KR correction?
The text was updated successfully, but these errors were encountered: