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We need some mechanism to stop after a max number of iterations and or to check problematic matrices at initialization time.
In case the inner loop terminates, we should still return a value and not quit with exit(1) the depending software too. I need this especially in the context of single-cell Hi-C, the failure of one matrix should not influence the computation of the others by terminating the whole software.
The text was updated successfully, but these errors were encountered:
Inner loops run infinite time if their
minCoeff
does not get smaller thandelta
ormaxCoeff
greater thanDelta
.https://github.com/deeptools/Knight-Ruiz-Matrix-balancing-algorithm/blob/master/src/krbalancing.cpp#L134
We need some mechanism to stop after a max number of iterations and or to check problematic matrices at initialization time.
In case the inner loop terminates, we should still return a value and not quit with
exit(1)
the depending software too. I need this especially in the context of single-cell Hi-C, the failure of one matrix should not influence the computation of the others by terminating the whole software.The text was updated successfully, but these errors were encountered: