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(env)mcrusoe@athyra:~/papers/2013-read-aligner/ecoli_rand_error$ abundance-dist.py reads.ht reads.fasta /dev/stdout | awk '{ print $2 }'|| This is the script 'abundance-dist.py'in khmer.
|| You are running khmer version 1.2-rc1-71-ged65dbc
|| You are also using screed version 0.7
|||| If you use this script in a publication, please cite EACH of the following:
||||* MR Crusoe et al., 2014. doi: 10.6084/m9.figshare.979190
||* Q Zhang et al., arXiv:1309.2975 [q-bio.GN]
|||| Please see http://khmer.readthedocs.org/en/latest/citations.html for details.
ERROR: /dev/stdout exists; not squashing.
from
30
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to
Probably also abundance-dist-single.py. Squashing code should be updated to ignore /dev
The text was updated successfully, but these errors were encountered:
Diagnostic and status information is output to STDOUT instead of STDERR, which also defeats attempts to stream abundance information to another program.
Probably also
abundance-dist-single.py
. Squashing code should be updated to ignore/dev
The text was updated successfully, but these errors were encountered: