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Reading BAM file as streams #18

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drtamermansour opened this issue Feb 24, 2021 · 0 comments
Open

Reading BAM file as streams #18

drtamermansour opened this issue Feb 24, 2021 · 0 comments
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@drtamermansour
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kmerDecoder needs to read sequences from BAM files but we do not need to implement or a BAM parser into kmerDecoder. We just need to find a tool (with stable conda installation) that would read the BAM files and stream the reads to kmerDecoder
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@drtamermansour @mr-eyes