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Following up on a conversation with Meng Liu, I wanted to link this bug. I confirmed it for ClinTox, but it may be present for other datasets: deepchem/moleculenet#15
One set of solutions would be:
Refactoring input parsing code to be shared across models
Adding smiles canonicalization to input parsing: from rdkit import Chem; Chem.MolToSmiles(Chem.MolFromSmiles(smiles), canonical=True)
Re-running string-based models on all benchmarks
The text was updated successfully, but these errors were encountered:
Following up on a conversation with Meng Liu, I wanted to link this bug. I confirmed it for ClinTox, but it may be present for other datasets:
deepchem/moleculenet#15
One set of solutions would be:
from rdkit import Chem; Chem.MolToSmiles(Chem.MolFromSmiles(smiles), canonical=True)
The text was updated successfully, but these errors were encountered: