DESCRIPTION

Package: scHiCcompare
Title: Differential Analysis of Single-cell Hi-C Data
Version: 0.99.5
Authors@R: c(
    person(given = "My", family = "Nguyen",
           email = "hamy.12398@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0009-0003-1118-7085")),
    person(given = "Mikhail",
           family = "Dozmorov",
           role = c("aut"),
           email = "mikhail.dozmorov@gmail.com",
           comment = c(ORCID = "0000-0002-0086-8358")))
Description: This package provides functions for differential chromatin interaction analysis 
    between two single-cell Hi-C data groups. It includes tools for imputation, normalization, 
    and differential analysis of chromatin interactions. The package implements pooling techniques 
    for imputation and offers methods to normalize and test for differential interactions across 
    single-cell Hi-C datasets.
Imports: 
    DT,
    data.table,
    dplyr,
    ggplot2,
    gtools,
    HiCcompare,
    lattice,
    mclust,
    mice,
    miceadds,
    ranger,
    rstatix,
    tidyr,
    ranger,
    gridExtra
Suggests: knitr,
    rmarkdown,
    testthat,
    BiocStyle
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.2
Depends: R (>= 4.2.0)
VignetteBuilder: knitr
biocViews: Software, SingleCell, HiC, Sequencing, Normalization
BugReports: https://github.com/dozmorovlab/ScHiCcompare/issues
URL: https://github.com/dozmorovlab/ScHiCcompare