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notebooks

edwardchalstrey1

use pypi scivision release

Dec 1, 2021

20cb83a · Dec 1, 2021

Name		Name	Last commit message	Last commit date
parent directory ..
1_explore_catalog.ipynb		1_explore_catalog.ipynb
2_data_operations.ipynb		2_data_operations.ipynb
3_explore_metadata.ipynb		3_explore_metadata.ipynb
4_image_operations.ipynb		4_image_operations.ipynb
5_hierarchical_labels.ipynb		5_hierarchical_labels.ipynb
6_scivision-model.ipynb		6_scivision-model.ipynb
7_performance-assessment.ipynb		7_performance-assessment.ipynb
8_holdout.ipynb		8_holdout.ipynb
README.md		README.md
environment.yml		environment.yml
requirements.txt		requirements.txt

README.md

Conda

Create a Conda environment with the required Python version and packages:

conda env create -f environment.yml
conda activate scivis-plankton
python -m ipykernel install --user --name scivis-plankton --display-name "Python (scivis-plankton)"

The third command makes scivis-plankton available as a notebook kernel.

pip

Install the required Python version and packages:

Make sure you are running Python >=3.7
- e.g. if using pyenv, you could run pyenv global 3.9
pip install -r requirements.txt