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Problems with base calling in fast5 and fastq format #3

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lalalagartija opened this issue May 10, 2018 · 0 comments
Open

Problems with base calling in fast5 and fastq format #3

lalalagartija opened this issue May 10, 2018 · 0 comments

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@lalalagartija
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Hi,

I did the base calling with the option -o fastq,fast5 and --files_per_batch_folder 0
I did got all the fast5 files sorted in the workspace directory but I can't find the fastq file. Where is it supposed to end ?
Can albacore convert fast5 files to fastq ?

Thank you very much,

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